User: 1603.neha

gravatar for 1603.neha
1603.neha70
Reputation:
70
Status:
Trusted
Location:
Last seen:
4 months ago
Joined:
1 year, 7 months ago
Email:
1********@gmail.com

Posts by 1603.neha

<prev • 42 results • page 1 of 5 • next >
0
votes
0
answers
141
views
0
answers
job run error in cufflink
... Dear sir, i have run my job from last two weeks ... but my job does not execute ... plzzz help me sir... ...
cufflinks written 7 months ago by 1603.neha70 • updated 7 months ago by Martin Čech ♦♦ 4.2k
0
votes
1
answer
657
views
1
answers
Comment: C: Adapter and quality trimming using Trim Galore integrated Galaxy
... hi jen i request you to please elaborate on trimming by using trimmomatic. i am working on single end NGS data. i got 60 percent mapping after trimming by trim galore so wanted to switch over to some other trimming method for improving the mapping. i requet you to pleae guide me and help me to do t ...
written 13 months ago by 1603.neha70
0
votes
1
answer
292
views
1
answer
data missing from account
... dear sir i have logged into my galaxy account and could not see anything in history however it shows used space as 17 percent. i am unable to see my data and analysis done so far. pleas ehelp me TIA ...
history account saved-histories written 14 months ago by 1603.neha70 • updated 14 months ago by Jennifer Hillman Jackson23k
0
votes
2
answers
399
views
2
answers
Answer: A: top hat splice junction
... hi thanks a lot jen ...
written 16 months ago by 1603.neha70
0
votes
2
answers
399
views
2
answers
top hat splice junction
... hi i am working on ngs data and used tophat for aligning the sra data to refernce genome. top hat output file is splice junction. i want to know that how to analyse it as it gives a table. like if i want to calculate no. of splice junctions.how to do it.please help. thanks ...
tophat rna-seq written 16 months ago by 1603.neha70
1
vote
1
answer
331
views
1
answer
i want extra memory
... hi i am working on ngs pipeline and reques tyou to allocate me increased meory space or help me find alternative as i am working on sra data. the dataset i am working upon i s big in size. thereby i am unable to do anything as my data only is occupying the space allocated. thanks ...
rna-seq written 16 months ago by 1603.neha70 • updated 16 months ago by Bjoern Gruening4.8k
1
vote
2
answers
896
views
2
answers
gene names from a vcf annotate file
... hi i need an answer. i have a vcf file and i want to see gene names on each chromosomes in the vcf file in a tabluar format I need it urgent asap please thanks in advance for helping ...
galaxy snp bwa written 17 months ago by 1603.neha70 • updated 17 months ago by Jennifer Hillman Jackson23k
0
votes
1
answer
518
views
1
answer
gene names from ucsc id
... i have cufflink and cuffdiff output. i want gene names in ncbi ids and a tabulated format. i can visualize them in IGV but how to export the data in text or tabulated format ...
cuffdiff rnaseq tophat mapping written 17 months ago by 1603.neha70 • updated 17 months ago by Jennifer Hillman Jackson23k
0
votes
1
answer
544
views
1
answer
cufflink output and gene id correlation
... hi i am following the basic rna seq pipeline. on my sra ids i have done qc and grooming. i did alignment with tophat and subjected to cufflink for assembly. i wnat to know tha t gene ids and transcript id provided ny cufflink in the output what does those mean?? my refernce genome is human geno ...
cuffdiff cufflink rnaseq written 18 months ago by 1603.neha70 • updated 18 months ago by Jennifer Hillman Jackson23k
2
votes
2
answers
827
views
2
answers
tophat result interpretation
... i have downloaded an SRA sequence from ebi. after doing QC and grooming i have run tophat. i have got the result Reads: Input : 180318237 Mapped : 107042965 (59.4% of input) of these: 9998307 ( 9.3%) have multiple alignments (20224 have >20) 59.4% overall ...
tophat rna-seq written 18 months ago by 1603.neha70 • updated 18 months ago by y.hoogstrate450

Latest awards to 1603.neha

Student 19 months ago, asked a question with at least 3 up-votes. For unable to find the Join tool as mentioned in tutorial
Appreciated 19 months ago, created a post with more than 5 votes. For unable to find the Join tool as mentioned in tutorial

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 129 users visited in the last hour