User: brarp0619

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brarp061910
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1 year, 8 months ago
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1 year, 9 months ago
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Posts by brarp0619

<prev • 6 results • page 1 of 1 • next >
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Comment: A: Galaxy jobs for Cufflinks in waiting (gray) mode x 2 days.
... the cuffdiff tool and the cuffmerge tool are also not running, they have stopped again. ...
written 20 months ago by brarp061910
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Comment: A: Workflow problems using galaxy
... even my cuffmerge tool is waiting to run since 2 days. what could be the problem? ...
written 20 months ago by brarp061910
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Answer: A: how to get fasta sequences of cufflink assembled transcripts
... use extract genomic DNA tool on this dataset with the genome as reference to get fasta sequences. ...
written 20 months ago by brarp061910
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galaxy not properly working
... i am trying to do my transcriptome data analysis but galaxy is not working properly and is taking a lot of time. i had run cuffdiff since two days but still it is preparing to run. same is the problem for cuffmerge for another dataset. what could be the problem? do suggest. ...
galaxy rna-seq written 20 months ago by brarp061910
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cuffmerge for single end and paired end
... is it correct to merge the single end and paired end data together in cuffmerge? if yes then why it takes too much of time? ...
assembly rna-seq written 20 months ago by brarp061910
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significant genes not shown in the scatter and volcano plots
... hello, When i plot the scatter plot and volcano plot for my cuffdiff output using cummeRbund it shows only the non significant genes (black dots) and does not show the significant genes. there are significant genes in the cuffdiff output. what could be the problem? ...
rna-seq written 21 months ago by brarp061910 • updated 7 months ago by akilabioinfo0

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