User: ana16

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ana1620
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Posts by ana16

<prev • 7 results • page 1 of 1 • next >
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Multi-Join shows Error
... Text manipulation -> Multi-Join tool, shows the following error when trying to merge tabular files. Can't locate Sort/Key/Natural.pm in @INC (you may need to install the Sort::Key::Natural module) (@INC contains: /galaxy/main/deps/perl/5.18.1/iuc/package_perl_5_18/114b6af405fa/lib/perl5 ...
galaxy text manipulation written 23 months ago by ana1620 • updated 23 months ago by Jennifer Hillman Jackson25k
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Answer: A: 100-way multiZ alignments (with hg38 as reference)
... Hi pkalungi, generally the names associated with the chromosomes are haplotypes, partial chromosomes or alternate reference loci. Hope that helps! ...
written 24 months ago by ana1620
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Answer: A: Galaxy unable to recognize MAF imported from UCSC genome browser
... Thanks Jen! I will try that. ...
written 24 months ago by ana1620
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Galaxy unable to recognize MAF imported from UCSC genome browser
... Hello all, I have successfully used the "Extract MAF blocks" tool from Galaxy, using the cached alignments. However, when trying to import MAF blocks (mm9) from UCSC genome browser, Galaxy seems not to be recognizing the file. First, the number of blocks appears as: ? blocks and species are not rec ...
maf galaxy alignment ucsc software error written 24 months ago by ana1620
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Filter MAF by chr
... Hi all, I have a big MAF file (7 Gb) corresponding to several alignments and regions in the whole genome. I have been trying to split them into daughter files depending on their chr. I am using the tool: Filter MAF by specified attributes, with the following parameters: When Species hg19 ...
maf galaxy written 2.1 years ago by ana1620
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Extract MAF not working - NameError
... Hello all, I am unable to extract MAF files from a set of genomic intervals. I was previously able to do this (last week) but after the release of the new version I couldn't do this again. I have seen posts on biostars reporting similar problems, but none yet related to MAF tools. The error I am g ...
maf galaxy written 2.1 years ago by ana1620 • updated 2.1 years ago by Jennifer Hillman Jackson25k
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Extract MAF for whole genome and some species
... Hello, I am trying to obtain the whole genomes for some species with Galaxy. I have found the very useful example guide "Making whole genome alignments usable for biologists", published by dan, but it only mentions how to get genomic regions of interest, usually genes. In my case, I would like to a ...
uscs maf galaxy written 2.1 years ago by ana1620 • updated 2.1 years ago by Jennifer Hillman Jackson25k

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