User: BAB Lab

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BAB Lab40
Reputation:
40
Status:
New User
Location:
University of Oregon
Last seen:
10 months, 2 weeks ago
Joined:
10 months, 3 weeks ago
Email:
b**********@gmail.com

Posts by BAB Lab

<prev • 4 results • page 1 of 1 • next >
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Comment: C: GATK3 Wrapper Error
... Yeah, I think you may be right. Thanks for the suggestion. ...
written 10 months ago by BAB Lab40
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Comment: C: GATK3 Wrapper Error
... Gotcha. So far, changing the parameters doesn't make a difference. In the screengrab linked below, you can see that I didn't set any of the optional parameters, just ran defaults for everything. No intervals specified, no BQSR, no comp. options. I did try setting some of the optional tool specific p ...
written 10 months ago by BAB Lab40
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Comment: C: GATK3 Wrapper Error
... Sure thing. I was attempting to use the Realigner Target Creator tool, although they all crash with the same error. From what I can tell, there's an xml wrapper for gatk that allows you to select an analysis type, which then calls wrappers for the individual tools once you make your selection. These ...
written 10 months ago by BAB Lab40
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GATK3 Wrapper Error
... Hi everyone, first time poster here, sorry if this is the wrong place for this. I just recently installed the latest stable checkout of Galaxy and am working on getting my tools up and running, ran into a bit of a roadblock. I installed the GATK v.3 wrapper from avowinkel (revision b80ff7f43ad1). Jo ...
galaxy software error written 10 months ago by BAB Lab40 • updated 7 months ago by christophe.habib330

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