User: clizama

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clizama0
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Posts by clizama

<prev • 13 results • page 1 of 2 • next >
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Answer: A: Annovar hg38 databases
... Thanks Jen Carlos ...
written 5 weeks ago by clizama0
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Annovar hg38 databases
... Hey, I was doing a tutorial For SNP detection. I was using the freebayes and VCFfilter using hg19 like a reference genome first and then I did the same analysis using hg38 like reference genome when I tried to annotate the VCF file with Annovar using hg19 like reference genome all was ok, however w ...
annovar galaxy snp written 5 weeks ago by clizama0
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Comment: C: Problems running galaxy Cloudman at Amazon
... Finally I open other node. I'm still I don't understand when I check in the cloudman. The new nodes has 60% por load, but the master node is just 4% load, that means all the jobs is doing by the new Node and the master basicaly is not doing nothing? ...
written 10 months ago by clizama0
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Comment: C: Problems running galaxy Cloudman at Amazon
... I realized if I start more working nodes the other tophat job start running. Question: If I run more working nodes, that means I started new instances in Amazon AWS and I get charge double or triple, depends how many node I start? Thanks Carlos ...
written 10 months ago by clizama0
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Comment: C: Problems running galaxy Cloudman at Amazon
... Has any way to change the order: I'm running tophat, its doing one job at the time not sure if I can set-up galaxy to run more than one job at the time (with top-hat) or other tools. ...
written 10 months ago by clizama0
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Comment: C: Problems running galaxy Cloudman at Amazon
... Thank you, Now is working. I have one question: What determine the number of task that galaxy run at the same time: For example: when I was running the FASTQC, Galaxy run just one at the time but when I was running the trimmer software it run 7 at the same time. Now with the alignment tool is doi ...
written 10 months ago by clizama0
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Answer: A: Problems running galaxy Cloudman at Amazon
... Just to be sure: To create and admin account: - I have to connect to my galaxy cloud IP address through ssh in ubuntu. - I have to edit the galaxy.ini.sample (add my user together with the others) - Rename galaxy.ini.sample to galaxy.ini - Reboot the Instance through amazon aws If I'm right: I ha ...
written 10 months ago by clizama0
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Answer: A: Problems running galaxy Cloudman at Amazon
... Hi Enis, I'm using the option that you send me but I'm trying to install new tools in the galaxy. Looks Like my user dosent have the tools shed. Not sure how to get tophat and all this inside of galaxy. Thanks Carlos ...
written 10 months ago by clizama0
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Problems running galaxy Cloudman at Amazon
... Hi, I used to use galaxy in amazon web services (from UCDAVIS). Looks like the public AMI is not running property anymore. I was wondering if has any other public AMI in amazon web services to run a galaxy instances or in other cloud. I was trying to use cloudman to run a galaxy instances in amaz ...
galaxy cloudman aws admin written 10 months ago by clizama0
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Comment: C: Tophat in usegalaxy
... Hi Jen, Did you find a way to fix the problem? Thanks Carlos ...
written 2.5 years ago by clizama0

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