User: Thibaut Guirimand

Reputation:
50
Status:
New User
Location:
INRA
Website:
http://www.guirimand.eu/
Twitter:
@guirimand
Scholar ID:
Google Scholar Page
Last seen:
5 months ago
Joined:
1 year, 5 months ago
Email:
f************@gmail.com

Posts by Thibaut Guirimand

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Job running with on queue datasets
... It wasn't on http://usegalaxy.org but on http://migale.jouy.inra.fr/galaxy/. The launched tools is under development and not published yet and the input data were created with the "upload_local_file" tool (to simplify the problem, it seems to be a modified version...). The **server has been restar ...
written 9 months ago by Thibaut Guirimand50
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Job running with on queue datasets
... Hi, I've seen that I can launch jobs with in still in queue datasets. So the job seems to start (yellow) without his data. So my questions are : - Is really the job running and waiting the dataset to be launched? - If yes, is this job taking a place on the cluster and blocking the queue? ...
dataset galaxy jobs queue written 9 months ago by Thibaut Guirimand50
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Answer: A: Bioblend error for conditional input
... It seems to be a bug with the `selected="true"` as parameter of my selected ``. When I send a query using the second option, the galaxy API seems to keep the default value as the selected parameter... fastq solid ...
written 11 months ago by Thibaut Guirimand50
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Bioblend error for conditional input
... Using the python bioblend package to send my job into Galaxy, I have an error when I try to send a value depending of a conditional argument. In my XML file, I have this conditional argument in my `` (without the _help_ and _label_ parameters) : fastq solid ...
python galaxy bioblend input written 11 months ago by Thibaut Guirimand50
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Answer: A: How can I find a user API key using the bioblend library?
... Using the [Martin Čech answer][1], here is a little portion of the code to access to the api key when the **email** and the **password are known** : import requests url = "http://galaxy.server:8080/api/authenticate/baseauth" response = requests.get(url, auth=(email, password)) ...
written 15 months ago by Thibaut Guirimand50
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How can I find a user API key using the bioblend library?
... Hi ! I'm working on a **python application** who interact with a Galaxy server. For this purpose, I use the library **bioblend** to communicate with galaxy. To start a job or get a user history, I have to use the user API key. I can generate it for the new users but, for users who already have an ...
bioblend written 15 months ago by Thibaut Guirimand50
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Bioblend: Accessing to the jobs and dataset IDs from a specific history
... Hi all! I'm currently trying to access to a galaxy instance using the bioblend API. I want to manage my histories and access to the started jobs and the uploaded or generated datasets in specific histories. I understand how to access to my history ID but I don't understand how to access to his con ...
python galaxy bioblend written 16 months ago by Thibaut Guirimand50 • updated 4 months ago by Aarthi Mohan10

Latest awards to Thibaut Guirimand

Scholar 11 months ago, created an answer that has been accepted. For A: How can I find a user API key using the bioblend library?
Scholar 15 months ago, created an answer that has been accepted. For A: How can I find a user API key using the bioblend library?

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