User: gupta

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gupta20
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2 months, 2 weeks ago
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1 year ago
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g****@math.fu-berlin.de

Posts by gupta

<prev • 9 results • page 1 of 1 • next >
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Comment: C: Read length from HT-Seq
... Thank you so much Jen. Its really helpful :) ...
written 8 months ago by gupta20
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Answer: A: cuffdiff tabular file conversion
... Hi, You should be able to open the tabular file directly in excel. Make sure to enter the appropriate delimiter for your data (e.g. 'tab') while opening it in excel. ...
written 8 months ago by gupta20
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Read length from HT-Seq
... Hi, Sorry for asking this very basic question. I have paired-end RNA-Seq data. After initial adapter and quality trimming, I used Tophat for alignment. Later, I obtained the read count using HT-Seq from the alignment file. My questions is: Can I also somehow obtain the length of the reads that wer ...
rna-seq ht-seq written 8 months ago by gupta20 • updated 8 months ago by Jennifer Hillman Jackson21k
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Comment: C: HTseq runs fail
... I read previous posts regarding this error, and tested the suggestions on my problem, i.e. * Re-runs - I performed re-runs. * Input/parameter adjustments - There are not many parameters associated with this software that can be modified to reduce the memory requirement. RESULT --> It still fa ...
written 9 months ago by gupta20
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HTseq runs fail
... Hi, I am unable to execute HTseq on my data. I receive the following error message: 'This job was terminated because it used more memory than it was allocated.' I am currently using only 55% of the space allotted to my account on the Galaxy main server. Do I need more space to run HTseq? I would ...
galaxy rna-seq written 9 months ago by gupta20 • updated 9 months ago by Jennifer Hillman Jackson21k
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Answer: A: RNor_6.0 assembly of rat genome - to add it to Galaxy
... Hello, For the option: Get data --> Upload file from your computer I still do not see 'RNor_6.0' in the options for Genome. Has this not yet been updated? Thanks. Best wishes, PG ...
written 9 months ago by gupta20
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Comment: C: Upload to the Galaxy ftp server
... No update on the problem yet..... ...
written 12 months ago by gupta20
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Comment: C: Upload to the Galaxy ftp server
... some more updates on the problem: - Finally, it took me two days and several tries to upload two files (3.4Gb each) to the ftp server. However, upload to the ftp server still fails when I try uploading new files. Until last Friday (11.03.2016), I had no problems in uploading files to the ftp serv ...
written 12 months ago by gupta20
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Upload to the Galaxy ftp server
... Hi, I have been trying to upload my fastq.gz RNA-seq files (~3.5 Gb ) on the Galaxy main FTP server since yesterday. But the upload always failed. I receive the following messages: "An error occured copying a file to the FTP server. Make sure you have permission to put files on the server. Detai ...
galaxy written 12 months ago by gupta20 • updated 12 months ago by Jennifer Hillman Jackson21k

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