User: eric

gravatar for eric
eric0
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New User
Location:
UC Berkeley
Last seen:
9 months, 2 weeks ago
Joined:
1 year, 10 months ago
Email:
e******@berkeley.edu

Posts by eric

<prev • 24 results • page 1 of 3 • next >
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Comment: C: load workflow create history in config?
... ok. I'll have to look into it. thanks. ...
written 9 months ago by eric0
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Comment: C: load workflow create history in config?
... I do assume that the user has to setup galaxy, jbrowse, and our sample workflows. Just trying to make that process easier, if I can automate some of it (or all of it). ...
written 9 months ago by eric0
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Comment: C: load workflow create history in config?
... Thanks. I'm writing a jbrowse plugin that executes a galaxy workflow. Trying to figure out how to setup an easy example. ...
written 9 months ago by eric0
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Comment: C: load workflow create history in config?
... Thanks for the reply. I'm trying to install a workflow and create a named history without using an api. This is to make a setup process for my application to require less steps. For example, I can generally install custom tools by just referencing them in galaxy.ini (tool_config_file=) Can I instal ...
written 9 months ago by eric0
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load workflow create history in config?
... Is there a way to load workflows and/or create a new history from a config file, without using the GUI or API (i.e. pre-runtime)? ...
galaxy written 9 months ago by eric0
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history created with api does not appear in GUI
... History created with API does not appear in GUI I recently installed Version 17.01. I never had a problem in 16.x Any idea why? ![enter image description here][1] GET /api/histories [ { name: 'My History', tags: [], deleted: false, purged: false, ...
software error written 10 months ago by eric0
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Answer: A: run.sh fails finding python2.7
... Ultimately, my solution was to move to Centos 7, which has python 2.7.5 in the box. ...
written 15 months ago by eric0
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Comment: C: galaxy docker deletes custom tools
... Yea, thanks for the input here. Cleared it up and now it's working. Thanks! https://github.com/bgruening/docker-galaxy-blast/issues/3 I also noted that that using the method you outlined, `shed_tool_conf.xml.sample` also needs to be modified to reference the /local_tools path (``), otherwise, the ...
written 16 months ago by eric0
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Comment: C: galaxy docker deletes custom tools
... Thank Bjoern, I put my changes in the export directory (galaxy_storage), which I understand is where I can store my persistent/writable customizations. Isn't that the point of the export directory? Or am I misinterpreting the role of the export directory? According to the documentation: dock ...
written 16 months ago by eric0
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galaxy docker deletes custom tools
... I'm having problems adding custom tools to a docker galaxy instance. Using galaxy docker https://github.com/bgruening/docker-galaxy-blast with **export** option. 1) i tried adding my tools into the galaxy-central/tools directory (galaxy-central/tools/mytools). And I put my tool_conf.xml in galaxy- ...
docker tools written 16 months ago by eric0 • updated 16 months ago by Bjoern Gruening4.8k

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