User: northcoted

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northcoted30
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2 years, 3 months ago
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Posts by northcoted

<prev • 8 results • page 1 of 1 • next >
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Answer: A: How to run a workflow using Dataset Collection?
... Hi. The following images shows the "lack of" progression of my workflow build and might better explain my problem. The 1st image shows the workflow editor, which was built via the "extract workflow" function of the "analyze data" option. ![Extracted WORKFLOW][1] [1]: https://i.imgsafe.org/e9 ...
written 2.1 years ago by northcoted30
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Comment: C: How to run a workflow using Dataset Collection?
... Thanks. I'll give it a try and get back to you. Cheers Derek ...
written 2.1 years ago by northcoted30
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How to run a workflow using Dataset Collection?
... HI, I created a workflow which has as input a dataset collection which consists of 12 BAM Files. However when I extract the workflow for editing, save and then run it, the "Input Dataset Collection" field simply says "No data dataset collection available.". This is produced when only selecting th ...
software error written 2.1 years ago by northcoted30
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Comment: C: Exception( "Failed to extract job." )
... Excellent. Many thanks. I'll give it a try. ...
written 2.1 years ago by northcoted30
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Comment: C: Exception( "Failed to extract job." )
... As an added note. This same failure occurs when attempting to extract any workflow built under "analyze data" using "Dataset Collections" as input. ...
written 2.2 years ago by northcoted30
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Comment: C: Exception( "Failed to extract job." )
... I seem to have found the following: In extract.py: The variables **assoc_name** and **query_assoc_name** ----------------------------------------------------------------------------------------------------------------------------------------- if job in summary.implicit_map_jobs: ...
written 2.3 years ago by northcoted30
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Comment: C: Exception( "Failed to extract job." )
... Hi. It occurred on a local Galaxy server which is unfortunately firewalled. Basically I have 12 .bam datasets from which I have created a dataset list as input to fastqc ( FastQC Read Quality reports (Galaxy Version 0.63) ( devteam 2d094334f61e) on Galaxy Server v16.01-516-g45bd65f. I can extra ...
written 2.3 years ago by northcoted30
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Exception( "Failed to extract job." )
... HI, I get the following error when attempting to create a workflow: > ****'Failed to find matching implicit job - job is %s, jobs are %s, assoc_name is %s.'**** Followed by: > **Exception( "Failed to extract job." )** The workflow consists of 12 input datasets which were then created as a ...
software error written 2.3 years ago by northcoted30

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