User: sureshhewabi

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sureshhewabi20
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2 years, 1 month ago
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Posts by sureshhewabi

<prev • 10 results • page 1 of 1 • next >
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access galaxy.ini configuration file from mako template file of the visualisation plugin
... Hi, how can i access galaxy.ini configuration file from mako template file of the visualisation plugin? I have a setting for output directory for my visualisation plugin and I have specified it in galaxy.ini file. In my template(mako), I use ajax call to access output files, but I dont like to hard ...
mako galaxy javascript galaxy.ini written 2.1 years ago by sureshhewabi20
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absolute path of Galaxy folder in template mako file in visualisation plugin
... Hi, My question is how can I get the absolute path of the galaxy root folder from mako template file of the visualisation plugin? For example, /Users/myname/Downloads/galaxy is my root folder. I want this value in javaScript. my template file has: <% root = h.url_for( "/" ) ...
mako galaxy visualisation galaxy.ini written 2.1 years ago by sureshhewabi20 • updated 2.1 years ago by carlfeberhard390
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Comment: C: where to write Controller class in Galaxy Visualisation plugin
... Hi carlfeberhard, Thank you for your help. I can now see SpectrumIdentificationItem data. Even though that method is good enough to extract information, what I found was there is a "show" method inside galaxy -> webapps -> galaxy -> api -> datasets.py I created if condition inside sho ...
written 2.5 years ago by sureshhewabi20
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Comment: C: where to write Controller class in Galaxy Visualisation plugin
... Hi, Thank you for your explanation. 1) I did copy the 'History Content API ID' and and replaced `` in url and yes, I can see file converted to JSON. 2) Secondly, I try to go to http://localhost:8080/api/datasets/da25dcb15a682136?data_type=raw_data&provider=xml&selector=SpectrumIdentificat ...
written 2.5 years ago by sureshhewabi20
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Answer: A: where to write Controller class in Galaxy Visualisation plugin
... Thank you for the replies,I am new to galaxy. I have anXML file and I need to visualise it. But in order to get data out of it, I need to use java library to extract data. I cannot extract all the data in one go. For example, if user click on "Customers" button, I need to send a AJAX call to a con ...
written 2.5 years ago by sureshhewabi20
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Comment: C: where to write Controller class in Galaxy Visualisation plugin
... Hi, I have seen then and built simple plugin according to that. In order to have a controller class, do I need to setup production server? but still, I am confused, where to write controller? ...
written 2.5 years ago by sureshhewabi20
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where to write Controller class in Galaxy Visualisation plugin
... Hi, I am developing a Galaxy Visualisation plugin(new to galaxy). I have written a basic mako file and manage to show basic html with plugin But I need to call a controller class (servlet) from mako file to fetch some data time to time by calling java model classes(business logic). **How can I writ ...
galaxy written 2.5 years ago by sureshhewabi20 • updated 2.5 years ago by carlfeberhard390
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Comment: C: Visualisation Plugin - Icon is not visible
... Thank you! It works. Sorry I did not know there is a local database connected. Problem Solved! ...
written 2.6 years ago by sureshhewabi20
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Comment: C: Visualisation Plugin - Icon is not visible
... Hi, No, I am not logged-in. I am testing in localhost:8080. how can i incorporate login? do i need to connect a database or is there a easy way to test this? Thank you   ...
written 2.6 years ago by sureshhewabi20
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Visualisation Plugin - Icon is not visible
...   Hi, I am new to galaxy and trying to develop a visualisation plugin. I have downloaded a local galaxy. 1) I have config galaxy.ini file: admin_users = myemail@gmail.com visualization_plugins_directory = config/plugins/visualizations 2) changed datatypes_conf.xml.sample to datatypes_conf.xml ...
galaxy written 2.6 years ago by sureshhewabi20

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