User: pavel.fibich

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pavel.fibich10
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Last seen:
10 months ago
Joined:
2 years, 7 months ago
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p***********@gmail.com

Posts by pavel.fibich

<prev • 5 results • page 1 of 1 • next >
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Answer: A: upload file format is data - type not recognized in galaxy
... I got the solution by debugging upload.py. Problem was in the environmental file, where was the command for changing directory. So running upload.py (that is run after the applying environmental settings, that included cd command) did not find galaxy.json, that is not specified in the absolute path. ...
written 12 months ago by pavel.fibich10
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Comment: C: upload file format is data - type not recognized in galaxy
... Backup database was one release before 16.07. Now, I have upgraded galaxy to 17.05, and it does not help. Before that I tried to run galaxy with empty database and tried to upload file, again it does not help, format of uploaded file was not recognized. ...
written 12 months ago by pavel.fibich10
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upload file format is data - type not recognized in galaxy
... Hello, do you have any idea why my galaxy 16.07 stop recognizing uploaded files and format of uploaded files is set to the format 'data'? After using older version of database backup, galaxy stop recognizing format of uploaded files (e.g. fasta, fastqc) and everything is set to format 'data'. Uplo ...
galaxy upload written 12 months ago by pavel.fibich10
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Comment: C: Passing job_resource_params_conf options to queue
... Hi David, thank you, just mylogin with @gmail.com as suffix. Cheers, Pavel ...
written 2.6 years ago by pavel.fibich10
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Comment: C: Passing job_resource_params_conf options to queue
... Hi David,  we are facing exactly the same issue. Can you provide us your complete solution (including parts of all configured files)? Cheers, Pavel ...
written 2.6 years ago by pavel.fibich10

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