User: j.m.fustin

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j.m.fustin10
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11 months ago
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1 year, 4 months ago
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j*********@pharm.kyoto-u.ac.jp

Posts by j.m.fustin

<prev • 8 results • page 1 of 1 • next >
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Answer: A: DiffBind on Galaxy
... Hi there, It was quite a while ago but if I remember well I "resolved" the problem by simply accessing Galaxy and generating my files with a PC (English OS) instead of my MacBook, and it worked. I hope it helps! JM ...
written 11 months ago by j.m.fustin10
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Tophat runs stay at the "This is a new dataset and not all of its data are available yet" for days.
... Hi There! I am experiencing some problems with Tophat. I have launched several analyses and it stays at the "This is a new dataset and not all of its data are available yet" stage without proceeding forward. It has now been one day without progress. I do not think there is a problem with my Fastq i ...
tophat written 15 months ago by j.m.fustin10 • updated 15 months ago by j.m.fustin270
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Answer: A: DiffBind on Galaxy
... ...and no, it does not. It is thus probably within the Galaxy system. ...
written 15 months ago by j.m.fustin10
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Answer: A: DiffBind on Galaxy
... Hi Zachary, Hi Jen, I believe the problem is in the automatic creation of the csv file describing the samples and contrasts for running DiffBind. This csv file should be encoded in "en_US.UTF-8" (as you can set up on a MAC) but apparently it is not, either because of the galaxy system or because of ...
written 15 months ago by j.m.fustin10
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DiffBind on Galaxy
... Hi, I am trying to perform Diff Bind on Galaxy using output from MACS and bam files for Read and Control. For the Read and control, I tried using raw tophat output bam files as well as the same bam files but sorted according to genomic coordinate. In both cases I get this message: error An error ...
en_us.utf-8 error written 16 months ago by j.m.fustin10 • updated 3 months ago by zachary.gaber80
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Comment: C: FTP login problem
... Hi Jen, Thanks for your answer but it does not help. I also tried to connect with FTP but when I do Filezilla tells me: Status: Connection established, waiting for welcome message... Response: SSH-2.0-OpenSSH_5.3 Error: Cannot establish FTP connectio ...
written 16 months ago by j.m.fustin10
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Answer: A: FTP login problem
... Thanks Jen, but it did not help as I had already tried FTP instead of SFTP. Anyway, it's OK now. On Filezilla it looked like the connection was made with the server but that there was a login or password problem, but actually it was simply a proxy problem. Solved it by setting up generic proxy typ ...
written 16 months ago by j.m.fustin10
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FTP login problem
... Hi,   Currently trying to upload data to galaxy via FTP. I created an account to which I can login but using my FTP client (winscp) to upload the data is unsuccessful and I get the "Access denied" message. I tried to connect via SFTP and FTP to no avail. Could you let me know how to proceed?   ...
ftp written 16 months ago by j.m.fustin10

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