User: Rob

gravatar for Rob
Rob50
Reputation:
50
Status:
New User
Location:
France
Last seen:
7 months, 1 week ago
Joined:
1 year, 11 months ago
Email:
a*******@gmail.com

Posts by Rob

<prev • 11 results • page 1 of 2 • next >
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Comment: C: how to restart the local galaxy server without cancel the running jobs
... I don't think this is possible. ...
written 16 months ago by Rob50
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Comment: C: Unable to Upload files
... What did you try ? There is a button to the top left for download files. (I'm not sure "tutorial" was a good tag...) ...
written 17 months ago by Rob50
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Comment: C: I have some problems to deal with macs.
... Hi, I suggest you to post your problem on https://github.com/taoliu/MACS/issues more than here since it's not a galaxy problem. You will find more help by asking directly the developers. ...
written 17 months ago by Rob50
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Answer: A: code behind and how galaxy reaches to our R Script/Python on clicking "Execute"
... Hi, The best and easiest way is to put a look on the galaxy.log file (/usr/local/galaxy/galaxy.log or something similar depends on your installation). ...
written 17 months ago by Rob50
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Answer: A: galaxy jobs with system-wide python
... You can create your virtualenv with the --system-site-packages option. It will use all the system's libraries already installed on your system, and everything that you install in the future. ...
written 17 months ago by Rob50
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Answer: A: Filter synthax for nested conditionals
... Hi, After multiple tests, it appears that the problem was in the filter syntax. The proper syntax is : <filter>(Step['step_select'] == 'step2') and (Step['Multithread']['threads'] is True)</filter> and not : <filter>(Step['step_select'] == 'step2') and (Step.Multithread['thr ...
written 23 months ago by Rob50
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Filter synthax for nested conditionals
... Hello, I write a tool and I have a problem with the outputs generated : My script is : <tool id=Pl" name="Parallel"> <command interpreter="bash"> #if ($Step.Multithread.threads is True): script_multi-threads.sh $input $Step.Multithread.nb_threads $output #else script_mono-thr ...
filter galaxy conditional synthax written 23 months ago by Rob50
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Comment: C: Naming output file according to input file
... Okay, but the format attribute doesn't modify the output file name. So I guess it's impossible to work on the name itself. Since my input file format is not recognized by Galaxy, I am then condemned to keep this extension in my output file name.. Thanks for your answers. ...
written 23 months ago by Rob50
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Comment: C: Naming output file according to input file
... The true command seem to be : <data name="output1" label="${input1.name}.something"> It return myInputFile.bam.something, but it's not what I want, do you have an idea for remove the .bam ? ...
written 23 months ago by Rob50
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Comment: C: Output file naming
... Hi, thanks for your answer. That the point. (you're right my example was wrong, sorry, I will correct that, but it show what I want to do) but by input file I mean the user file, witch is a .bam. And I want to rename my output file by myself, cause in fact the soft doesn't product an extension reco ...
written 23 months ago by Rob50

Latest awards to Rob

Teacher 14 months ago, created an answer with at least 3 up-votes. For A: code behind and how galaxy reaches to our R Script/Python on clicking "Execute"
Scholar 14 months ago, created an answer that has been accepted. For A: Filter synthax for nested conditionals
Scholar 23 months ago, created an answer that has been accepted. For A: Filter synthax for nested conditionals

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