User: blumroy

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Comment: C: Homer getDiffExpression.pl edgeR
... Okay, thanks.  We unfortunately never heard from him back and thought some users may know more details..  Roy ...
written 2.2 years ago by blumroy0
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Homer getDiffExpression.pl edgeR
... To complement out cuffdiff analysis we thought to take a parallel route using Homer. to do so we basically follow this protocol: makeTagDirectory pairend.sam -format sam -fragLength 250 -removeSpikes 10000 5 -genome /data//projects/mm9/ref.fasta -checkGC -tbp 1 -sspe -flip    Then, we run analyz ...
edger getdiffexpression homer rna-seq written 2.2 years ago by blumroy0 • updated 2.2 years ago by Jennifer Hillman Jackson24k

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