User: snehalbpatil87

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Posts by snehalbpatil87

<prev • 29 results • page 1 of 3 • next >
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custom tool and text file
... Hello everyone: I am working on local instance of galaxy . My tool runs the bash script which needs the text file during execution. I want to avoid adding hard coded path to the file. Is there any way to keep the file in global location folder where tool can access it or do I need to hard code the ...
custom local tool dependencies written 14 months ago by snehalbpatil8730 • updated 14 months ago by Jennifer Hillman Jackson23k
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Galaxy workflow doesnt allow to conect
... Hello I am trying to connect bismark methyl extractor to the next custom tool I created in the my local galaxy. When I normally run the analysis, it allows me to run the next step. When I try to connect these two tools in galaxy workflow, it doensnt allow me to connect? Does anybody know the reas ...
input custom-tool connect workflow output written 14 months ago by snehalbpatil8730 • updated 14 months ago by Jennifer Hillman Jackson23k
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Comment: C: html output with galaxy
... I did git pull and it helped me to solve the issue. Thanks Snehal ...
written 15 months ago by snehalbpatil8730
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Comment: C: html output with galaxy
... I am running local galaxy instance. My local version is 16.04. ...
written 15 months ago by snehalbpatil8730
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HTML output issue with FastQC on a local Galaxy
... Does anyone also having problem with html output in Galaxy ? I am getting raise Exception('Unknown parameter type (%s)' % ( type( value ) )) Exception: Unknown parameter type () error. Thanks Snehal ...
output local fastqc html admin written 15 months ago by snehalbpatil8730 • updated 15 months ago by Jennifer Hillman Jackson23k
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(Closed) multiple output with html format in Galaxy Unknown parameter type (<type 'NoneType'>)
... I am trying to zip output file from my custom tool using html functionality in galaxy. When I run the the tool, I can see the folder created and files created. But as soon as job finished those files are deleted and when I click on the download result i get following error: **File '/home/snehal/G ...
wrapper galaxy html tool development written 15 months ago by snehalbpatil8730 • updated 15 months ago by Jennifer Hillman Jackson23k
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Exception: Cannot locate xUnit report for tests - required to build planemo report and summarize tests.
... Hello Everyone : Does any one encounter this below error while running the basic planemo lint command? Exception: Cannot locate xUnit report [/tmp/tmppPYgnG/xunit.xml] for tests - required to build planemo report and summarize tests. Thanks Snehal ...
planemo galaxy tool developement written 16 months ago by snehalbpatil8730
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Comment: C: Internal Server Error for workflow
... But If I directly clone the repository, how will I keep different copy of my changes and get updates from main repository? ...
written 16 months ago by snehalbpatil8730
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Answer: A: Internal Server Error for workflow
... Hello Dannon: Did you get chance to check on the version I have? Is there any tutorial on how to fork and clone it galaxy repository ? Thanks Snehal ...
written 16 months ago by snehalbpatil8730
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Comment: C: Internal Server Error for workflow
... dd12980777181092984b16c786ed1eaf3aafa08b ...
written 16 months ago by snehalbpatil8730

Latest awards to snehalbpatil87

Scholar 19 months ago, created an answer that has been accepted. For A: R job in galaxy

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