User: jannetta.steyn

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Last seen:
1 year, 7 months ago
Joined:
1 year, 10 months ago
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j*************@newcastle.ac.uk

Posts by jannetta.steyn

<prev • 15 results • page 1 of 2 • next >
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Answer: A: running samtools faidx
... So is it not possible on usegalaxy.org? ...
written 20 months ago by jannetta.steyn10
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running samtools faidx
... Is it possible to run samtools faidx in Galaxy? If so how? Thanks for any help Jannetta ...
samtools written 20 months ago by jannetta.steyn10
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Answer: A: Installing new tools
... I installed bwa and it results in this error when I try to run it from Galaxy: Fatal error: Exit code 127 () /home/jannetta/galaxy/database/job_working_directory/000/12/tool_script.sh: 9: /home/jannetta/galaxy/database/job_working_directory/000/12/tool_script.sh: bwa: not found What is causing this ...
written 20 months ago by jannetta.steyn10
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Installing new tools
... When installing tools from the toolshed, does it also install the binaries for the tool? For instance, on a local installation of Galaxy, if I go to Admin, Search Tool Shed, find bwa and then install it. Does this only install the wrappers into Galaxy or does it actually install bwa too? Do I have t ...
toolshed written 20 months ago by jannetta.steyn10 • updated 18 months ago by tuto34520
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Answer: A: Galaxy local installation - download reference genomes
... Hi Jen I am only now getting around to try and do what you suggested here. I installed " fetch fasta data manager that permits the creation of a new dbkey" but I don't know how to use it. Where do I find it? I have logged into my Galaxy instance with admin rights. I then go to Local data where I f ...
written 20 months ago by jannetta.steyn10
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Answer: A: mpileup fails to run
... Hi Jen I submitted the error as you suggested. but I haven't created a new history. I'm not sure what I should copy into the new history. ...
written 20 months ago by jannetta.steyn10
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Comment: C: mpileup fails to run
... Yes, it is usegalaxy.org. ...
written 20 months ago by jannetta.steyn10
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mpileup fails to run
... About a month ago I succesfully ran mpileup on a file in my history. Today I tried to run mpileup on exactly the same file but it fails with this error: Could not parse tag "" in "" I have no idea what is causing this. Can someone perhaps shed light on this problem? Regards Jannetta ...
mpileup written 20 months ago by jannetta.steyn10
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Answer: A: Galaxy workflow inputs
... I shall answer my own question. I found something remotely related when I googled the problem which put me on the right track. As far as I'm concerned this is a somewhat ridiculous state of affairs, because I don't understand the need for this feature and I also don't understand why it is not docum ...
written 21 months ago by jannetta.steyn10
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Answer: A: Galaxy local installation - download reference genomes
... Hi Jen Thank you very much for responding to my question.However, I'm still at a loss. Firstly, I don't know why anyone would want to use version 1.4 of anything when the current version is 3.5. So I'm not even looking at version 1.4. Version 3.0 was release over two years ago. I Installed "gatk" ...
written 21 months ago by jannetta.steyn10

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