User: marcuslevitt

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Posts by marcuslevitt

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Add Reference Genome When Designing A Workflow
... Hello Scientists, I have been running my workflow manually and when I use CuffLinks and CuffDiff I have been performing bias correction, to which the software automatically assigns the hg19 random chrM HapMap, which I believe to be the correct file. However, I have now designed an automatic workfl ...
cuffdiff cufflinks hapmap reference genome written 2.1 years ago by marcuslevitt0 • updated 2.1 years ago by Jennifer Hillman Jackson24k
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Generate SQ Lite database for cummeRbund not working with CuffDiff, and other general questions
... Hi everyone, I am currently a final year undergraduate studying at UoM set with the final yet project of RNA Seq differential expression. I have been using a breast cancer cell line with added E2 and RNA Seq data collected over a time course; 0, 30, 60 & 90 mins.  I have used the standard work ...
sq lite cuffdiff cummerbund written 2.2 years ago by marcuslevitt0 • updated 2.2 years ago by Jennifer Hillman Jackson24k

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