User: cdean11

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cdean1120
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2 years, 7 months ago
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c******@rams.colostate.edu

Posts by cdean11

<prev • 16 results • page 1 of 2 • next >
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Restricting access to local Galaxy server
... Is there a way to restrict people who are not logged in from uploading data to a production Galaxy server? Best, Chris ...
server access local galaxy admin written 20 months ago by cdean1120 • updated 20 months ago by Jennifer Hillman Jackson25k
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Files uploaded via ftp not accessible on local instance of galaxy
... I have a local instance of Galaxy installed with a postgresql server. I am using proftpd as my ftp server. When I upload files via FileZilla, I am not able to use the **view data** functionality. However, the uploaded files appear in the correct directory: /home/galaxy-dist/database/ftp/test@gm ...
galaxy software error written 2.4 years ago by cdean1120
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Comment: C: Dealing with a deterministic amount of output files in tool wrapper
... The files are being stored in the correct directory. What's weird is that when I run the example code found in the galaxy central repository; everything works fine and I'm able to retrieve multiple txt or tabular files. In my job's directory I can see my output files being stored as something like ...
written 2.4 years ago by cdean1120
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Comment: C: Dealing with a deterministic amount of output files in tool wrapper
... Thanks for the response Dave, but unfortunately, Galaxy is still not able to load any output files into my history pane. I've tried refreshing the pane as well, but still no luck. ...
written 2.4 years ago by cdean1120
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Dealing with a deterministic amount of output files in tool wrapper
... I have a tool that creates a deterministic amount of output files based on the choice of input parameters. The tool outputs a varied number of compressed (gzip) fastq files. When the tool completes, the output files are created, but I am unable to load the data into my history pane. The output files ...
galaxy software error written 2.4 years ago by cdean1120 • updated 2.4 years ago by Dave B.410
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Comment: C: Can you upload your own KrakenDB to local instance of Galaxy?
... I've installed the Data Manager, but I am still not able to select a Kraken database. ...
written 2.5 years ago by cdean1120
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Optional Workflow Components
... I have a workflow with two tools that I'd like to make optional. Is there a way to make certain workflow components optional using the workflow editor? ...
galaxy written 2.5 years ago by cdean1120
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Can you upload your own KrakenDB to local instance of Galaxy?
... I've seen a couple questions about this, but none of the answers addressed my particular question. I've tried uploading a Kraken database to my local instance of Galaxy, but am unable to select it in the "Select Kraken Database Option". I tried converting the datatypes for the database, but am still ...
galaxy software error written 2.6 years ago by cdean1120
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Comment: C: "select a kraken database"
... Is it possible to upload your own Kraken database using a local instance of Galaxy? ...
written 2.6 years ago by cdean1120
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Downloading tools from toolshed
... I want to download a bam to fastq converter from Galaxy's tool shed, but don't want to have to download 20 other tools to do so. For example, I know Picard and Bedtools comes with a bam2fastq, but I don't want the whole package installed. There is one bam_to_fastq converter in the toolshed, but it h ...
galaxy written 2.6 years ago by cdean1120 • updated 2.6 years ago by Bjoern Gruening5.1k

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