User: Greg Edwards

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Greg Edwards190
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6 years, 5 months ago
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Posts by Greg Edwards

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Re: [Galaxy-Dev] Welcome.Html Page
... Hi, I've found that I need to be really aggressive with forcing a purge & refresh of the browser when changing things like static/welcome.html and static/images/whatever.png. It might be a function of the nginx light-weight HTML renderer within Galaxy caching things on top of the normal caching. ...
galaxy written 6.4 years ago by Greg Edwards190 • updated 6.4 years ago by fubar1.1k
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Answer: A: Problems Starting Galaxy Cloudman
... Team, I'm up and running fine, thanks. Thanks Dannon for the info on 'migrated_tools_conf.xml.sample', that allowed a normal update. Thanks Ross for the info on coverage datatype definition from datatypes_conf.xml. Thanks Enis for the tip that a new clustername guarantees a clean new Galaxy. I've ...
written 6.4 years ago by Greg Edwards190
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Comment: C: Problems Starting Galaxy Cloudman
... Dannon, Thanks for that. Adding 'migrated_tools_conf.xml.sample' fixed up most problems. I'm left with a couple though. 1. The tools (apart from file upload with Get Data) don't initially execute. This includes my new tools and existing ones like Text Manipulation / Paste Files side-by-side. They ...
written 6.4 years ago by Greg Edwards190
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Problems Starting Galaxy Cloudman
... Hi, I'm trying to restart my Galaxy Cloudman service, using the same approach that has been successful over the last couple of months .. - launch AMI 861460482541/galaxy-cloudman-2011-03-22 as m1.large - update from Cloudman console - copy in my tools etc etc - restart - away we go, all works ...
bam samtools written 6.4 years ago by Greg Edwards190
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Progress Indicators/Feedback For Long Jobs On Galaxy
... Hi, This has been raised a number of times .. one issue is at ... https://bitbucket.org/galaxy/galaxy-central/issue/250/progress-of- running-jobs but seems to have been dropped from Open to On Hold. There was another similar request in the issues list but I can't find it just now. I'd be gald to ...
galaxy written 6.5 years ago by Greg Edwards190 • updated 6.5 years ago by Jennifer Hillman Jackson25k
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Comment: C: Problem Uploading Files Gt 1 Mbyte To Galaxy Cloud
... Dannon, Cool, that seems to have worked. I set server { listen 80; client_max_body_size 500m; in /opt/galaxy/pkg/nginx/conf/nginx.conf and issued sudo kill -HUP `cat /opt/galaxy/pkg/nginx/logs/nginx.pid` and it's uploading my test files of 2mb to 25mb ok. I think i ...
written 6.6 years ago by Greg Edwards190
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Comment: C: Problem Uploading Files Gt 1 Mbyte To Galaxy Cloud
... Hi Dannon, I found nginx.conf at /opt/galaxy/pkg/nginx_upload_module-2.0.12/nginx.conf It contains .. client_max_body_size 100m; That looks like 100 Megabyte ?? but seems to result in 1 Megabyte. Can I set it to 10000m, or 1g ? Can't see how to restart nginx yet. Thanks, Greg E ...
written 6.6 years ago by Greg Edwards190
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Comment: C: Problem Uploading Files Gt 1 Mbyte To Galaxy Cloud
... Dannon, Thanks. Glad it's not my error ! Could ypu let me know where nginx.conf is, and how to "restart the nginx process" ? This is a prototype proof-of-concept implementation, and I think a once-per-instance custom fix which preserves the simple ability to use Get Data / Upload Files From Your C ...
written 6.6 years ago by Greg Edwards190
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Problem Uploading Files Gt 1 Mbyte To Galaxy Cloud
... Hi, I'm building a Galaxy Cloud implementation, and running into a problem uploading data files > 1 Mbyte, or 1,048,576 bytes. I've started Galaxy Cloudman and a single server, all according to to the Wiki. I can upload fasta format files < 1048756 bytes, and general CSV format peptide files ...
galaxy written 6.6 years ago by Greg Edwards190 • updated 6.6 years ago by Dannon Baker3.7k
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Should I Hg Update A Galaxy Cloud ?
... Hi, Still experimenting with Galaxy and Cloudman on AWS EC2. The latest galaxy AMI is described as 861460482541/galaxy-cloudman-2011-03-22. How up to date is that Galaxy rev ? Should I use hg to update it before running, or saving as a customised Cloud AMI ? Thanks. -- Greg Edwards, Port Jacks ...
galaxy written 6.6 years ago by Greg Edwards190 • updated 6.6 years ago by Dannon Baker3.7k

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