User: xusiyujune

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xusiyujune10
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Posts by xusiyujune

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Comment: C: cuffdiff conditions related question
... Hello, Understood! Thank you so much! :) 2016-08-07 10:29 GMT+09:00 Mo Heydarian on Galaxy Biostar < notifications@biostars.org>: ...
written 7 months ago by xusiyujune10
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Comment: C: cuffdiff conditions related question
... Thank you very much for the reply! :) I still have one question. If I ran each experimental condition of species A as a "condition" in cuffdiff, I would get the comparisons between three samples: (1) A1 vs A2, A1 vs A3, and A2 vs A3. But I still can run all nine samples together and I still can get ...
written 7 months ago by xusiyujune10
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cuffdiff conditions related question
... Hello, I am using Galaxy to analyze the RNA-seq data. I want to ask one question related to the cuffdiff option "condition". I have several different species, say A, B and C. And I have three different experiment conditions of each strain, say 1, 2, 3. When I am doing the cuffdiff analysis, can I a ...
rna-seq written 7 months ago by xusiyujune10 • updated 7 months ago by Mo Heydarian480
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Cuffdiff output redundant genes
... Hello, I am using the Galaxy tool Cuffdiff to analyze the RNA-seq data. But for the output file "genes.fpkm_tracking", I found there are redundant genes, I mean the same gene short name, but with different tracking IDs, different gene IDs and different locus. Could you please tell me why this happen ...
rna-seq written 9 months ago by xusiyujune10 • updated 9 months ago by Jennifer Hillman Jackson21k

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