User: abryants

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abryants0
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Posts by abryants

<prev • 7 results • page 1 of 1 • next >
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Comment: A: Server queue problem
... I can't even upload a few simple files: all are queued but not running... Since yesterday. Anyone having same issue? ...
written 3 months ago by abryants0
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Comment: C: expression of transgenes
... This gives me some ideas. Appreciated! ...
written 2.4 years ago by abryants0
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expression of transgenes
... I work with Drosophila transcriptome and sometimes I need to evaluate expression of artificial transgenes, like LacZ, that are not part of the genome assembly. How can I do that? First, I thought of adding the LacZ sequence (as a separate contig) to the Drosophila genome assembly, but that would mea ...
rna-seq written 2.4 years ago by abryants0
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Answer: A: History column wouldn't show the content
... Thanks! I use Firefox and the history pane got back to normal after I cleaned up browser cache and restarted my computer. Much appreciated,   AB ...
written 2.6 years ago by abryants0
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History column wouldn't show the content
... Hello, My history column remains empty and wouldn't show its content even after pressing the reload button. Logging off from the account and then loggging on again does not help either. My space usage is about 45%. I can see the content when I execute Show Structure from the history menu, but not o ...
galaxy written 2.6 years ago by abryants0
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Comment: A: cuffdiff does not accept BAM files produced by HISAT2
... UPDATE: Well, I guess i don't do it right. TopHat BAMs are giving the same error: Fatal error: Exit code 1 () Error: sort order of reads in BAMs must be the same ...
written 2.6 years ago by abryants0
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cuffdiff does not accept BAM files produced by HISAT2
... I ran HISAT2 on my several  RNAseq samples and then wanted to process the resulting BAMs with cuffdiff for splicing differences. The cuffdiff does not accept these BAM files and states the need for the files to be in the same order. I sorted the files with BAMtools, but it didn't fix the issue. I wi ...
bam cufflinks rna-seq written 2.6 years ago by abryants0

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Popular Question 2.3 years ago, created a question with more than 1,000 views. For cuffdiff does not accept BAM files produced by HISAT2

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