User: westcott

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westcott10
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w*******@berkeley.edu

Posts by westcott

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Answer: A: Adding a custom genome to Galaxy
... Thanks for the quick reply. I did upload it to my history, however when I specify tophat to use my reference genome in the workflow editor, it resets to the human genome when I go to run it. I assumed the Galaxy instance had some constraint on using built in genomes for tophat. If that isn't the cas ...
written 3 months ago by westcott10
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Answer: A: type of file for reference genome
... That doesn't seem to work for me. ...
written 3 months ago by westcott10
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Adding a custom genome to Galaxy
... My reference genome is not available. It is a recent publication. How do I go about adding it? Paper: http://www.pnas.org/content/114/21/E4296.full Data is in SI and at Phytozome:http://genome.jgi.doe.gov/pages/dynamicOrganismDownload.jsf?organism=Czofingiensis ...
custom-genome fasta reference genome tophat written 3 months ago by westcott10

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