User: inspiresnehal

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Posts by inspiresnehal

<prev • 8 results • page 1 of 1 • next >
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python: double free or corruption -
... I am running below command in loop for multiple datasets. If I just run one time. it runs fine. But if I run 2 or more times then it gives below error: Command is : bowtie2 -q -x /home/sn/Galaxy/hg19/bowtie_path/base/genome -U $input | samtools view -bS -> subdir3/$output samtools sort subdir3/ ...
samtools galaxy written 22 months ago by inspiresnehal20
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Answer: A: Bash script reading input in loop
... opps didn't realise I  posted in galaxy only forum..Looks like I cant delete it either....I did try googling the solution ..my case is different from the answers on the google..I don't  have always fixed no of arguments.. ...
written 23 months ago by inspiresnehal20
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Bash script reading input in loop
... I want to read bash script e.g test.sh input1 id1 name1 input2 id2 name2 input3 id3 name3 I want to read input into loop and assign group of three parameters to local variable and run different command e.g   for var in "$@"        do     input=$var     id=$var+1     name=$var+2     rawFastq=${i ...
bash loop written 23 months ago by inspiresnehal20
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Answer: A: how to define multiple outputs in galaxy
... Hello Hans: I applied yr solutions means the toy example you provided .. I tried implementing them . These example created text files (this$i.txt) at the back-end but didnt create the links in the history..As u mentioned I was missing that 'discover_datasets' tag. I thought i dodnt need them for th ...
written 23 months ago by inspiresnehal20
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Answer: A: how to define multiple outputs in galaxy
... I applied yr solution it creates files in the subdir but doesn't creates output link in history .. ...
written 23 months ago by inspiresnehal20
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Answer: A: how to define multiple outputs in galaxy
... Hello Hans-Rudolf:   Thank you for your reply  and sorry for not taking so long to reply . I applied yr solution it creates files in the subdir but doesn't creates output link in history ..   Below is the input form : <tool id="align" name="PullDown_Sample_Alignemnt" version="0.0" force_his ...
written 23 months ago by inspiresnehal20
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Answer: A: how to define multiple outputs in galaxy
... hello Hans-Rudolf:   I refereed to the link you provided but i couldn't understand the example they provided. E.g they provided says    echo "Hello" > $report;     echo  subdir1 > $report     mkdir subdir1;     echo "This" > subdir1/this.txt;     echo "That" > subdir1/that.txt;     m ...
written 24 months ago by inspiresnehal20
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how to define multiple outputs in galaxy
... I am developing tool that uses the <repeat> tag in the xml file to gather an  number of inputs files from the user. The tool gathers all the inputs create output files for each one of them. Is it possible to create a new output for each of the corresponding inputs?  How to define multiple outp ...
galaxy multiple outputs written 24 months ago by inspiresnehal20

Latest awards to inspiresnehal

Scholar 23 months ago, created an answer that has been accepted. For A: how to define multiple outputs in galaxy

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