User: Philipp.rathert

Reputation:
30
Status:
New User
Location:
Germany
Last seen:
1 year, 10 months ago
Joined:
2 years, 2 months ago
Email:
P**************@ibc.uni-stuttgart.de

Posts by Philipp.rathert

<prev • 23 results • page 1 of 3 • next >
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Comment: C: Save and load complete histories
... Hi Hans-Rudolf, as I said, I am really a newbie (wetlab scientist). I think the user will be galaxy, but where do I find the name of the galaxy DB? and how do I restore this in the new instance? ...
written 22 months ago by Philipp.rathert30
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Install-tools via yaml file error
... dear all, I want to install a bunch of tools using the install-tools function. In my yaml file tool.yml i have specified the url if my docker instance wit the ip adress i use in the web browser and the api_key is admin When i run install-tools i get this and nothing happens. Anybody has an idea wh ...
yaml written 22 months ago by Philipp.rathert30
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Comment: C: Save and load complete histories
... Hi Hans-Rudolf, I understand what you mean, but i think i am unable to do this. I am happy that i get an instance running in a docker container. I am also not sure if the parts in the galaxy wiky, which explain how to do this completely translate to docker... I have seen that there are other people ...
written 22 months ago by Philipp.rathert30
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Save and load complete histories
... dear all, i am running a local galaxy instance but have some problems with it (difficult to explain). However, I want to kill the complete instance and reinstall. Therefore I want to save all old histories and export them as data file. I get a xy.tar.gz file on my computer but when I want to import ...
histories written 22 months ago by Philipp.rathert30
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Answer: A: SRA conversion program
... As far as I know there should be a SRA_tool available via the main tool shed... ...
written 22 months ago by Philipp.rathert30
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Comment: C: ImportError: No module named utils.gff_util using Genomics Operations "subtract"
... ok got it, was confused since there was no update uption mentioned under Admin-manage installed tools... ...
written 23 months ago by Philipp.rathert30
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Comment: C: ImportError: No module named utils.gff_util using Genomics Operations "subtract"
... you refer to package_bx_python_0_7 and package_galaxy_ops_1_0_0? ...
written 23 months ago by Philipp.rathert30
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Answer: A: ImportError: No module named utils.gff_util using Genomics Operations "subtract"
... Dear All,   I think I have a similar mistake when using intersect: it would be great if somebody has an idea how to fix this. Traceback (most recent call last): File "/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/intersect/5f72be09cfd3/intersect/gops_intersect.py", line 21, in <module> ...
written 23 months ago by Philipp.rathert30
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[ngs.plot] NGS plot script freeze on local galaxy
... Dear All, we are trying to use NGS-plot on our local docker-galaxy-stable instance. The script freezes whenever we try to start ngs.plot. does anybody have an idea what is wrong and how to fix this? There is no error message or anything. Thank you very much. Kind regards, Philipp ...
script ngs.plot written 23 months ago by Philipp.rathert30
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Answer: A: Help with local galaxy upload performance
... We switched to docker now and this was a game changer! I can highly recommend this... ...
written 23 months ago by Philipp.rathert30

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