User: Toqa Manasrah

gravatar for Toqa Manasrah
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Last seen:
6 years, 4 months ago
Joined:
6 years, 5 months ago
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t*********@student.gsu.edu

Posts by Toqa Manasrah

<prev • 7 results • page 1 of 1 • next >
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Answer: A: [Galaxy-Dev] Urgent Help Needed
... Thank you so much Dannon. I appreciate your help but I need some more clarification. in the tool I am integrating (which is java classes) if the input parameters are ./main.bash eps0.3_40reads.fa population10_ref.fa 15 6 120 Then teh output is in eps0.3_40reads_I_6_15_CNTGS_DIST0_EM20.txt As u ...
written 6.4 years ago by Toqa Manasrah70
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[Galaxy-Dev] Urgent Help Needed
... Hi Everybody, I am running a tool which is not defining the output file name as parameter. the tool is running and I can see the output file in the history directory but not in the history frame. how could I solve the problem? I should see and download the output file from the history but I see an ...
galaxy written 6.4 years ago by Toqa Manasrah70
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Answer: A: Define A Path For The Command Files
... I qouted this error message from galaxy, part of it: Could not find the main class: ConvertSegemehlIraExtended_awk. Program will exit. Unable to access jarfile vispaAssemb.jar Unable to access jarfile vispaEM.jar ________________________________ To: galaxy-dev@bx.psu.edu Cc: galaxy-user@lists.bx.p ...
written 6.4 years ago by Toqa Manasrah70
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Define A Path For The Command Files
... Hi everybody, I am integrating a new tool which depends on several other libraries (part of the tool). when galaxy run my tool, it can find main command but not the deepest. where should I define the path of the libraries and command folders I need. by teh way, all these commands and libraries ar ...
galaxy written 6.4 years ago by Toqa Manasrah70 • updated 6.4 years ago by Jennifer Hillman Jackson24k
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Error Running Tool
... Hello everybody, I am trying to run my tool Vispa but every time i try to i got this error messages: An error occurred running this job: /home/galaxy/galaxy- dist/tools/vispa/main.bash: line 13: ./parser_v.2.sh: No such file or directory /home/galaxy/galaxy-dist/tools/vispa/main.bash: line 16: . ...
galaxy written 6.4 years ago by Toqa Manasrah70
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Galaxy Upload Tool
... Hi everybody, I am integrating my own tool with galaxy. the command to run is: ./main.bash threads n t > & the input files read and reference are of type fasta. threads, t and n are integers. log is to prevent console outputs. should I load these files from the page which ...
galaxy written 6.4 years ago by Toqa Manasrah70 • updated 5.5 years ago by Enis Afgan680
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Running Shell Script
... Hi everybody, I am integrating my software ViSpA inside galaxy and I have two questions: 1: the main program is a shell script (.sh) which call another shell script, which call Java executables. should I include any interpreter inside the .xml tag? and what that should be? 2. how to guarant ...
galaxy written 6.4 years ago by Toqa Manasrah70

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