User: Mónica Pérez Alegre

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Spain
Last seen:
3 years, 1 month ago
Joined:
6 years, 5 months ago
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Posts by Mónica Pérez Alegre

<prev • 6 results • page 1 of 1 • next >
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Chip-Seq S.Cerevisiae Ion-Torrent
... Hi everybody. I´m trying to analyze Chip-SEq Data from Ion-Torrent using Peak Calling/MACS. I have some questions: · How do I establish the Tag size? The median of size reads in my data are 156pb, the max 306? · Bandwidht: is the sonication size? Thanks in advance Regards ☺If ...
macs written 4.2 years ago by Mónica Pérez Alegre60 • updated 4.2 years ago by Jennifer Hillman Jackson24k
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Rv: Subdivide Peaks
... Hi I´m working with data from tiling array (S.cerevisiae). I need to analyze the distribution of the enrichment signal along the length of all ORFs. So I want subdivide the genomics intervals into 10 segments independent of ORF size. Are there any tools in galaxy for this? Thanks for the helpful ...
galaxy written 6.1 years ago by Mónica Pérez Alegre60
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Subdivide Peaks
... Hi I´m working with data from tiling array (S.cerevisiae). I need to analyze the distribution of the enrichment signal along the length of all ORFs. So I want subdivide the genomics intervals into 10 segments independent of ORF size. Are there any tools in galaxy for this? Thanks for the helpful ...
galaxy written 6.1 years ago by Mónica Pérez Alegre60
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Answer: A: "Job Is Waiting To Run"
... Hi Shisheng My partner and me have the same problem since yesterday. We would be very grateful for any help. regards De: galaxy-user-bounces@lists.bx.psu.edu [mailto:galaxy-user- bounces@lists.bx.psu.edu] En nombre de Shisheng Li Enviado el: miércoles, 21 de marzo de 2012 20:30 Para: galaxy-user ...
written 6.1 years ago by Mónica Pérez Alegre60
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Problem Interset Interval Tools
... Hi I´m this problema when I Try to use Intersect uintervals tools: Info: Skipped 6 invalid lines of 1st dataset, 1st line #1258: "chr9 357415 360396 ORF - YIR002C MPH1 S000001441 Active Verified 2982 ", problem: 536870912 is larger than the size of this BitSet (536870912). Some idea? Thanks rega ...
written 6.1 years ago by Mónica Pérez Alegre60 • updated 6.1 years ago by Jennifer Hillman Jackson24k
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Rv: Visual And Conputational Analysis Of Positive Sites In Chip-Chip Data
... Hi all We are working with chip-chip data of S. cerevisiae (from Affymetrix) and actually we have two problems and we don´t know if it´s possible to perform in Galaxy: 1. We use the tool intersect to get the annotation of positive genomic regions in our file bed. After, we need calculate statis ...
galaxy written 6.4 years ago by Mónica Pérez Alegre60 • updated 6.4 years ago by Abhay Krishna70

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