User: kep

gravatar for kep
kep10
Reputation:
10
Status:
New User
Location:
United Kingdom
Last seen:
5 months, 3 weeks ago
Joined:
2 years, 5 months ago
Email:
k**********@soton.ac.uk

Posts by kep

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Installing Gemini tools
... Hi Bjoern, I was trying to install the 'gemini_*' tools from the admin web pages via the main tool shed. This error came about from that process. If this is not the best way to do it any more could you please advise what is. As far as i can tell as I have had numerous other successful conda inst ...
written 5 months ago by kep10
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Comment: C: Installing Gemini tools
... Hi, Bjoern Please see below. This is for the gemini 0.18.1 package dependency of the 'package_gemini_0_18_1' repository. From what I can tell it downloads the gemini 0.18.1 installer which is where the real issue lies as it doesn't have the conda-forge channel in its conda call. If I add it (a ...
written 6 months ago by kep10
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Installing Gemini tools
... Hi, I'm trying to install the Gemini tools on a local galaxy instance (release 17.05) and am running into issuse, specifically that the gemini dependency of "package_gemini_0_18_1" fails to install. It appears there are some dependencies of gemini which are installed through conda, however they ha ...
gemini written 6 months ago by kep10
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Comment: C: "No such file or directory" when using mpileup
... Adding the samtools path system wide fixed the issue.  Many thanks for the assistance! Kev. ...
written 2.4 years ago by kep10
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"No such file or directory" when using mpileup
... Hi, We have a local install of galaxy which has the mpileup 0.0.3 tool installed (we can't go higher as we need to use a 1.1.x version of samtools).  When we run the tool it appears to run for a reasonable amount of time and the result dataset is written to disk and is of a non-zero size however we ...
mpileup written 2.5 years ago by kep10 • updated 2.5 years ago by Wolfgang Maier530

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