User: bio_vitus

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bio_vitus0
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Posts by bio_vitus

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Does anyone knows how to generate dbSNP "Reference-Ordered Data" (ROD) file ?
... I like to know how to generate dbSNP "Reference-Ordered Data" (ROD) file from dbSNP data and is it possible to generate it for per human chromosomes. Appreciate your help. Sincerely, bio_vitus   ...
dbsnp written 2.9 years ago by bio_vitus0 • updated 2.9 years ago by Jennifer Hillman Jackson25k
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Comment: C: ERROR MESSAGE: Your input file has a malformed header: VCFv4.2 is not a supporte
... Dear Ms. Jen, Thank you for your reply. There are two other VCF inputs to the tool. Actually, I am using Mpileup, Freebayes and GATK unified genotyper in galaxy. The Mpileup generates VCF file in version 4.2 format and freebayes, GATK unified genotyper generates VCF file in version 4.1 format in g ...
written 2.9 years ago by bio_vitus0
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ERROR MESSAGE: Your input file has a malformed header: VCFv4.2 is not a supported version - Eval Variant Tool
... Hi, I am getting this error when running eval variant tool from GATK ver 2.8 in galaxy. ERROR MESSAGE: Your input file has a malformed header: VCFv4.2 is not a supported version   I am enclosing the header of vcf file which I am using to run eval variant tool and like to know if anybody can he ...
gatk vcf written 2.9 years ago by bio_vitus0 • updated 2.9 years ago by Jennifer Hillman Jackson25k

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