User: joseph.andrews

Reputation:
20
Status:
New User
Location:
Canada
Last seen:
2 months, 3 weeks ago
Joined:
2 years, 1 month ago
Email:
j*************@lhsc.on.ca

Posts by joseph.andrews

<prev • 15 results • page 1 of 2 • next >
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Freeing up memory space/Converting BAM files
... Hello I have deleted and purged permanently all histories and data, and yet I am told I am using 97% of my available space. logging out and back in does not affect this calculation. Can you advise, as I have a new project I am working on? Secondly, Is there a tool for converting BAM files created ...
quota coordinate perm-delete account convert written 12 weeks ago by joseph.andrews20 • updated 12 weeks ago by Jennifer Hillman Jackson23k
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Analysis of forward and reverse reads
... Hello. Newbie here: I have recently done some chip-seq, and for each sample, I have different FASTQ files for forward and reverse reads (forward and reverse reads differentiated by -1 and -2 file extensions, respectively). There are a total of 12 samples. My question is: how do I deal with thi ...
chip-seq analysis written 5 months ago by joseph.andrews20 • updated 5 months ago by Jennifer Hillman Jackson23k
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Extracting multiple files with NCBI SRA Tools - BAM Fastq Pileup
... Hello I'm trying to import multiple BAM files from NCBI-SRA. A particular sample has 19 runs, each with its own SRR number. Do I have to import these one at a time, or can multiple SRR accessions be imported simultaneously? Thanks! ...
bam nbci ncbi-sra sra fastq written 7 months ago by joseph.andrews20 • updated 7 months ago by Jennifer Hillman Jackson23k
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Comment: C: Alignment going very slowly
... Hi Jen. Having trouble getting to Usegalaxy.org. Problems? Joe Activity on a post you are following on Galaxy Biostar ( http://biostar.usegalaxy.org) User Jennifer Hillman Jackson ( http://biostar.usegalaxy.org/u/254/) wrote Answer: Alignment going very slowly ( http://biostar.usegalaxy.org/p ...
written 19 months ago by joseph.andrews20
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Alignment going very slowly
... Hello. Are there issues with Galaxy today" I have been running some alignments for 2 days now, and only 4 of 6 have completed, the others haven't seemed to progress. Should I restart for these two samples? Joe Andrews ...
rna-seq written 19 months ago by joseph.andrews20 • updated 19 months ago by Jennifer Hillman Jackson23k
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Comment: C: Errors in post alignment files
... No worries, just found them. They are the Vimeo videos in Help/Support. But the Videos link in the help section is not working... Joe Activity on a post you are following on Galaxy Biostar ( http://biostar.usegalaxy.org) User yena.oh ( http://biostar.usegalaxy.org/u/8720/) wrote Answer: Error ...
written 19 months ago by joseph.andrews20
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Comment: C: Errors in post alignment files
... No. I am referring to the tutorial videos at Galaxy.org. I went Go Galaxy.org, login, click "Help", get a dropdown menu, click "videos". Says the page cannot be found (http 404 error). Thanks again Joe Activity on a post you are following on Galaxy Biostar ( http://biostar.usegalaxy.org) Us ...
written 19 months ago by joseph.andrews20
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Comment: C: Errors in post alignment files
... Thanks Yena. Clicking on the link in the error message and clicking "auto-detect seems to have worked. Thank you for your quick reply. Also, do you know what happened to all the videos? I keep getting an error 404 message when I try to view them... Take care. Joe Activity on a post you are fol ...
written 19 months ago by joseph.andrews20
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Errors in post alignment files
... Hello. I was trying to perform an alignment of data (Tophat) which had been run through Fast Groomer to database/build Human Dec. 2013 (GRCh/hg38) (hg38). Some of the resultant files had an error message: An error occurred setting the metadata for this data set. with a link: set it manually or r ...
errors alignment tophat rna-seq written 19 months ago by joseph.andrews20 • updated 19 months ago by yena.oh70
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Where are the tutorial videos?
... Hi Guys.  Something happen to the videos?  I find them very helpful, butI keep getting a 404 error. ...
learn videos support written 23 months ago by joseph.andrews20 • updated 23 months ago by Jennifer Hillman Jackson23k

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