User: ib7

gravatar for ib7
ib70
Reputation:
0
Status:
New User
Location:
United Kingdom
Last seen:
2 months, 1 week ago
Joined:
2 years, 8 months ago
Email:
i**@sanger.ac.uk

Posts by ib7

<prev • 4 results • page 1 of 1 • next >
0
votes
2
answers
103
views
2
answers
Answer: A: bam to fastq from galazy gives different fastq size of bamtofastq from bedtools
... hi Jen thanks for the answer. I've used the bedtools bamtofastq on a bam generated by galaxy then I use the galaxy tool. so the input is the same, but these are the sizes: bedtools: read1 28679667 read2 28767491 galaxy read1 72646227 read2 83312211 i ran the bedtools bamtofastq from the comm ...
written 9 weeks ago by ib70
0
votes
2
answers
103
views
2
answers
bam to fastq from galazy gives different fastq size of bamtofastq from bedtools
... hi anyone knows why bam to fastq from galaxy platform gives different fastq size of bamtofastq from bedtools? thanks ib ...
bam picard bam-to-fastq parameters bedtools written 9 weeks ago by ib70
1
vote
1
answer
514
views
1
answer
downloading to a local machine in bulk
... hello, how can i download to my local machine from galaxy without clicking on the save icon for each dataset? I know about the "export to file" option but this is to save to another galaxy server? is this to save to my local amchine as well? the wget/curl option doesnt seem to work on the full hist ...
dataset history galaxy export-import download written 16 months ago by ib70 • updated 16 months ago by Jennifer Hillman Jackson25k
1
vote
1
answer
508
views
1
answer
HaplotypeCaller tool on galaxy
... is haplptypecaller form gatk avaialble on galaxy? icant seem to find it. There is UnifiedGenotyper, but the GATK website says "This tool has been deprecated in favor of HaplotypeCaller, a much more sophisticated variant caller that produces much better calls, especially on indels, and includes featu ...
deprecated gatk galaxy written 16 months ago by ib70 • updated 16 months ago by Jennifer Hillman Jackson25k

Latest awards to ib7

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 90 users visited in the last hour