User: brigida.rusconi

Reputation:
40
Status:
New User
Location:
United States
Last seen:
1 year, 3 months ago
Joined:
2 years, 6 months ago
Email:
b****************@gmail.com

Posts by brigida.rusconi

<prev • 12 results • page 1 of 2 • next >
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Answer: A: Delete galaxy toolshed account
... I cannot change the email address, as I forgot my pwd and cannot access the toolshed with that username as the previous email address is not in service anymore. Is there a way you can reset the username to another email? ...
written 15 months ago by brigida.rusconi40
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Delete galaxy toolshed account
... Hi, I am trying to remove an old galaxy toolshed account that is linked to a deactivated email account, but I don't remember my pwd. Is there a way to delete that owner completely and make a new one with a permanent email address? Brigida ...
galaxy toolshed written 15 months ago by brigida.rusconi40 • updated 15 months ago by Jennifer Hillman Jackson24k
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discover_dataset rename dataset in history
... Hi, I am using discover_dataset to retrieve multiple output files created. The xml works fine, but I would like to rename the datasets only according to their input and not with the tool description. I have looked at multiple examples of xml, but I could not find one where this is addressed. I want ...
galaxy written 2.1 years ago by brigida.rusconi40
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Answer: A: bowtie2 rename dataset from paired list
... I am not sure what you mean by single bam file input. There will be only one bam file generated for each paired end read dataset that you put into Bowtie2. If you are using a single reads file it should work too, because we take the name from the first input in the list. ...
written 2.1 years ago by brigida.rusconi40
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Answer: A: bowtie2 rename dataset from paired list
... Hi, So we changed the xml file of the Bowtie to <data format="bam" name="output" label="${library.input_1.name}"> This renames the bam files to the same name as the pairs. I still see the error in the workflow regarding the absence of a paired list in my history, but it still runs. In case ...
written 2.5 years ago by brigida.rusconi40
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Comment: C: bowtie2 rename dataset from paired list
... I tried the renaming with the paired and there it works. I think that in Bowtie2 it has an issue with recognizing the paired_collection. I can do the Bowtie2 with a paired_collection, but the workflow manager shows me this error when I am selecting the option "History does not include a dataset coll ...
written 2.5 years ago by brigida.rusconi40
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bowtie2 rename dataset from paired list
... Hi, I have a paired reads dataset list that I use for a bowtie2 workflow. I try to rename the output file with the #{input_1} option but I get an empty string for the output file. I tried to use the #{own_file} that renames according to the reference sequence and that works. I have tried different ...
galaxy bowtie written 2.5 years ago by brigida.rusconi40
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Deleted files still available
... Hi, I have observed that even if files are deleted and purged from a history they still show up as an option to copy over in the copy dataset option. Moreover, if I delete a file in my history and use a tool that allows me to use multiple inputs selected based on the format they still show up in th ...
galaxy written 2.5 years ago by brigida.rusconi40 • updated 2.5 years ago by Jennifer Hillman Jackson24k
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Comment: C: Paired-end dataset collection with Bowtie2
... I tried again and it looks like I was not waiting long enough for it to finish. I was thrown off by the info saying no dataset collection. Thanks for the help. ...
written 2.5 years ago by brigida.rusconi40
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Comment: C: Paired-end dataset collection with Bowtie2
... Hi, I have done both as described above. It starts the Bowtie2, but when I look at the information and it says no dataset collection. 1. paired dataset collection link: https://www.dropbox.com/s/ovt3rzc69hesmns/Screenshot%202015-10-14%2012.49.58.png?dl=0 2. Bowtie2 settings link: https://www.drop ...
written 2.5 years ago by brigida.rusconi40

Latest awards to brigida.rusconi

Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Bowtie2 problems dataset not available

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