User: Rochak Neupane

Reputation:
60
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New User
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Last seen:
9 years, 6 months ago
Joined:
10 years, 4 months ago
Email:
r*******@berkeley.edu

Posts by Rochak Neupane

<prev • 6 results • page 1 of 1 • next >
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Galaxy With Python2.6
... Will galaxy source be updated to be compatible with python 2.6? The README.txt file stats that it requires python 2.4 or 2.5, but I used scramble.py script to build the required eggs for 2.6. Trying to run galaxy (run.sh), I get a few warnings about deprecated modules: sets, sha. lib/galaxy/util/_ ...
galaxy written 9.5 years ago by Rochak Neupane60
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Answer: A: Maf Format - Bx_Python Missing In Local Galaxy Install?
... Oh, I forgot to mention, but on the loaded data, the following is displayed below "AutoDetect" button when I click on the pencil. " This will inspect the dataset and attempt to correct the above column values if they are not accurate. Required metadata values are missing. Some of these values may n ...
written 9.6 years ago by Rochak Neupane60
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Maf Format - Bx_Python Missing In Local Galaxy Install?
... Hello, When importing MAF file, local galaxy install loads the data but shows an error: No data: global name 'bx' is not defined When I tried to convert maf to fasta, I got the following error: Traceback (most recent call last): File "/home/rochak/galaxy_latest/lib/galaxy/datatypes/converters/m ...
galaxy written 9.6 years ago by Rochak Neupane60
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Display At Ucsc Main (Gbrowse)
... When a data is in BED format or Customtrack and build is on of ucsc, a link shows up with a link to "display at UCSC main". I was wondering if this would be possible to do with gbrowse for data in Gff or Gff3. I added gbrowse links to: tool- data/shared/gbrowse/gbrowse_build_sites.txt for data in ...
gff written 9.7 years ago by Rochak Neupane60
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File Format On Biomart Imported Data
... Hello, When importing BioMart data from galaxy, the format is always "text". In the "Results" page in BioMart where it says "Export al results to Galaxy, the only available format is "TSV". Export all results to Galaxy HTMLCSVTSVXLS Unique results only Should this not make the data imported to ...
galaxy written 9.8 years ago by Rochak Neupane60
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Local Sequence Storage
... Hello, I recently started using galaxy. I installed a local copy of galaxy, and am wondering how I can add our own sequences so that galaxy understands them when fetching. So instead of fetching from PSU it'll look at a local source. Is this doable? If so, how can I configure this? Thanks, Rochak ...
galaxy written 10.3 years ago by Rochak Neupane60 • updated 10.3 years ago by David Goodstein10

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