User: lhorb

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lhorb0
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Posts by lhorb

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Galaxy error--"Misconfiguration of the Galaxy job running system"
... I am getting this message too and have asked the same question with no response yet. My guess is that it is site wide and they are busy fixing it. Good luck. ...
written 19 months ago by lhorb0
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Unable to run job due to a misconfiguration of the Galaxy job running system. Please contact a site administrator.
... "Unable to run job due to a misconfiguration of the Galaxy job running system. Please contact a site administrator." Trying to run Bowtie2 and keep getting this error. What does it mean? Thank you. Lori ...
rna-seq software error alignment written 19 months ago by lhorb0 • updated 19 months ago by Jennifer Hillman Jackson25k
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Cufflinks error message
... What does this error message mean? cufflinks v2.2.1 cufflinks -q --no-update-check -I 300000 -F 0.100000 -j 0.150000 -p 10 -G /jetstream/scratch0/main/jobs/13006120/inputs/dataset_15965745.dat /jetstream/scratch0/main/jobs/13006120/inputs/dataset_15988618.dat Fatal error: Exit code 1 () E Thank yo ...
cufflinks written 2.1 years ago by lhorb0 • updated 2.1 years ago by Martin Čech ♦♦ 4.7k
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Tophat not recognizing the ref genome I loaded
... I am trying to run Tophat as I did in a previous analysis using the same ref genome. It is a fasta file that I uploaded as I did before. It is the exact same fasta file I uploaded before but it is not showing up as a ref from my own history in Tophat. What am I missing here? Thank you. ...
genome reference tophat written 2.2 years ago by lhorb0 • updated 2.2 years ago by Jennifer Hillman Jackson25k
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Comparing two datasets with a custom genome
... I have an ran seq experiment -paired end, 100 bp, where I am trying to compare control vs test samples.  I am using a Xenopus Laevis genome (Xenbase v9.1)  which I uploaded via FTP.   I uploaded the data sets, trimmed them and then aligned them with TOPHAT tool to my 'custom genome from history'. W ...
customgenome ucsc rna-seq written 2.8 years ago by lhorb0 • updated 2.7 years ago by Jennifer Hillman Jackson25k
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Comment: C: Import new genome build for X.laevis 7.1
... I had the same question but can't figure out how to do this from the instructions posted below.  Did you have any success with it?   ...
written 2.8 years ago by lhorb0

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