User: henryrobins3

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Posts by henryrobins3

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False negative results in GATK unified genotyper output
... Hi all, I'm having some problems with the output of the GATK unified genotyper.  Essentially I put through a series of positive controls to check the validity of the output, in said output there were no SNPs or indels at the sites of known genetic variation for these samples. At no point earlier i ...
gatk false negative dbsnp 144 g1k_37 written 2.8 years ago by henryrobins30 • updated 2.8 years ago by Jennifer Hillman Jackson25k
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galaxy doesn't recognise dbSNP file I uploaded
... Hi I'm somewhat new to the game and struggling with the GATK unified genotyper. I found a dbsnp file (in vcf format) but Galaxy isn't recognising it as a vcf file. I tried modifying it under attributes and that changed the file type to vcf but galaxy still isn't accepting that I have a vcf file. ...
gatk written 2.9 years ago by henryrobins30 • updated 2.9 years ago by Jennifer Hillman Jackson25k

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