User: karmella.haynes

Reputation:
40
Status:
New User
Location:
United States
Last seen:
4 months, 3 weeks ago
Joined:
2 years, 4 months ago
Email:
k**************@asu.edu

Posts by karmella.haynes

<prev • 13 results • page 1 of 2 • next >
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Answer: A: DeepTools plotProfiles - how to eliminate the legend?
... Here is my current solution. I doubled the height and y-axis max value. I will crop this and add a line to the top in Powerpoint. Better solutions are more than welcome. ![http://i126.photobucket.com/albums/p86/drhaynes/Galaxy158-plotProfile_image.png][1] [1]: http://i126.photobucket.com/album ...
written 4 months ago by karmella.haynes40
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DeepTools plotProfiles - how to eliminate the legend?
... Hello community. I am excited to be able to use DeepTools > plotProfile to diplay ChIP-seq signal distributions around a set of genes, but I am struggling with one annoying problem. For one of my data sets, the legend overlaps my data. Does anyone have any solutions for moving the legend out of ...
plotprofile chipseq deeptools written 4 months ago by karmella.haynes40
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Comment: C: Selection of multiple input files in workflow causing immediate browser refresh
... I have the same problem. I thought I was just doing something wrong. My work-around has been to edit the workflow to have multiple inputs connect to the next step (a single node), but this solution does not allow flexibility. When ever I want to use more or fewer input files, I have to edit the work ...
written 16 months ago by karmella.haynes40
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Cloudman instance: Tophat error
... Hello community, I am encountering the following error when I try to run Tophat Galaxy Version 0.9 within my Cloudman instance: > [bam_header_read] EOF marker is absent. The input is probably truncated. > [bam_header_read] invalid BAM binary header (this is not a BAM file). > [bam_index_c ...
bam cloudman software error tophat written 17 months ago by karmella.haynes40 • updated 17 months ago by Jennifer Hillman Jackson23k
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Comment: C: Tophat in Cloudman: missing built-in genome
... Thank you! This completely addresses my issue in a very timely manner. Thank you for offering and supporting Galaxy! ...
written 17 months ago by karmella.haynes40
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Comment: C: Tophat in Cloudman: missing built-in genome
... Wait, I figured out the problem. In my Coud, the built-in genomes do appear for Tophat Galaxy **Version 0.9**. I recently added Tophat Galaxy Version 2.1.0 in order to be consistent with some previous work I did in the usegalaxy.org environment. In my Cloud, I cannot access built-in genomes throug ...
written 17 months ago by karmella.haynes40
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Comment: C: Tophat in Cloudman: missing built-in genome
... Thank you. Now that I remember correctly, I did launch through https://launch.usegalaxy.org/launch, which generated a unique address. Once my Cloudman instance was set up, I logged in with the username I set up for myself (and made myself admin). After following these steps, I have been able to uplo ...
written 17 months ago by karmella.haynes40
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Comment: C: Tophat in Cloudman: missing built-in genome
... I did not launch it that way. I set up an Amazon Cloud account and launched it via http://###.###.##/cloud/ ...
written 17 months ago by karmella.haynes40
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Tophat in Cloudman: missing built-in genome
... Hell all, After several days of struggling, I finally managed to set up a Galaxy instance in Cloudman...only to discover that I cannot run Tophat because there are no built-in genomes. I want to use the Human Feb. 2009 hg19 reference data: Human (Homo sapiens) (b37): hg19 I set up a Cloudman insta ...
cloudman tophat built-in genome written 17 months ago by karmella.haynes40 • updated 17 months ago by Mo Heydarian790
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Comment: C: BUG: Cannot save "unchecked" Strand and Name Identifier attributes for interval
... Thank you. The metadata problem is still there. I just sent the e-mail with all of the details and a shared history link. This issue is very annoying, especially since I have a similar interval file that seems to behave just fine (it does not force me to select Strand). This file was added a few mon ...
written 20 months ago by karmella.haynes40

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