User: david.a.morais

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Posts by david.a.morais

<prev • 36 results • page 1 of 4 • next >
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Comment: C: Fail to upload data to local Galaxy 16.07
... It should be inside your /tool-dependency/ directory (after you have it installed via toolshed) Somewhere like /tool-dependency/samtools/0.1.19/iuc/package_samtools_0_1_19/c9bd782f5342/ ...
written 7 months ago by david.a.morais110
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Answer: C: Python modules not found when running job
... I had a similar problem with the upload tool I posted the answer here: https://biostar.usegalaxy.org/p/20865/#21014 I hope this helps you Cheers ...
written 9 months ago by david.a.morais110
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Answer: A: Fail to upload data to local Galaxy 16.07
... SOLUTION After talking to Bjoern Gruening, he found the solution to fix the upload problem. 1. Install samtools 0.1.19 2. Create a symlink inside tool-dependency pointing to the installation dir ln -s /tool-dependency/samtools/0.1.19/iuc/package_samtools_0_1_19/c9bd782f5342/ /tool-depen ...
written 9 months ago by david.a.morais110
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Answer: A: Error installing 'perl' dependency
... Hi I had the same problem recently and the fix is pretty simple. You must install expat-devel (using a package manager), prior to install the tool using the tool shed. yum install expat-devel (on a CentOS) apt-get install expat-devel (Ubuntu) (not sure if on ubuntu this is called expat-devel). A ...
written 10 months ago by david.a.morais110
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Fail to upload data to local Galaxy 16.07
... Hi, I have a new (fresh) install of the Galaxy 16.07 (change_set 727270261750fc71979e7ba9fec96b10091ff104). I am having problems to upload files to this Galaxy. In the logs the error appears as Traceback (most recent call last): File "/srv/galaxy/database/job-working-directory/000/5/set_m ...
set_metadata python lib not found upload written 10 months ago by david.a.morais110 • updated 7 months ago by heidi.hough0
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Comment: C: Disappearing history from history panel
... Unfortunately it is not Bjoern, I have tested in multiple browsers and after a complete shutdown of the computer. Also, tried from different computers to no avail. ...
written 10 months ago by david.a.morais110
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Comment: C: Disappearing history from history panel
... HI Jennifer, Thanks for you quick reply to this post. Here are the answers. 1- Yes, the refresh button has be clicked to no avail. 2- The behavior is triggered after the user logs in. In this case the history panel is completely empty. If a user has other functioning history he can switch to tha ...
written 11 months ago by david.a.morais110
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Disappearing history from history panel
... Hi, We are having problems on our local Galaxy where histories disappears randomly for some users. When the user tries to switch from one working history to a "broken history" the interface throws a message like " an error was encountered while loading content ..." There is a detail link that po ...
history local metadata admin gui written 11 months ago by david.a.morais110 • updated 11 months ago by Jennifer Hillman Jackson23k
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Error in qiime package installation
... Hi I am trying to install the package_python_2_7_qiime_1_9_1 and I am getting problems when it tries to install numpy 1.9 from package_numpy_1_9 (iuc). The error that appears is numpy 1.9 package Error Traceback (most recent call last): File "/ramdisk/galaxy/0.6/galaxy-env/bin/eas ...
numpy 1.9 qiime written 17 months ago by david.a.morais110
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Comment: C: DESeq2 file missing
... Hi Bjoern, Thanks again for your help. It led me to find out the problem. It seems that Deseq was not sourcing /ramdisk/galaxy/0.6/tool-dependency/R/3.2.1/iuc/package_r_3_2_1/fae49a02a848/env.sh Instead it was using /usr/bin/R. That's why when I tried manually sourcing all files it worked and vi ...
written 19 months ago by david.a.morais110

Latest awards to david.a.morais

Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Fail to upload data to local Galaxy 16.07
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Error installing 'perl' dependency

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