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Posts by j.d.helix
Comment: C: BAM files after BWA MEM
... Hi Bjoern, Thank you so much for your prompt reply! I understand. Ciao, DHelix ...
... Hi, BWA-MEM in Galaxy produces a BAM file. Could anyone please tell me if the BAM file is sorted (by chromosome coordinates) and/or index? I found NGS:SAMtools/Sort BAM file is able to do the sorting, but I don't know which tools in Galaxy can index a BAM file (similar to samtools index)... Thank ...
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