User: j.d.helix

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j.d.helix10
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Posts by j.d.helix

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Comment: C: BAM files after BWA MEM
... Hi Bjoern, Thank you so much for your prompt reply! I understand. Ciao, DHelix ...
written 3.0 years ago by j.d.helix10
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BAM files after BWA MEM
... Hi, BWA-MEM in Galaxy produces a BAM file. Could anyone please tell me if the BAM file is sorted (by chromosome coordinates) and/or index? I found NGS:SAMtools/Sort BAM file is able to do the sorting, but I don't know which tools in Galaxy can index a BAM file (similar to samtools index)... Thank ...
bam galaxy bwa written 3.0 years ago by j.d.helix10 • updated 3.0 years ago by Bjoern Gruening5.1k

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