User: Assaf Gordon

gravatar for Assaf Gordon
Assaf Gordon320
Reputation:
320
Status:
Trusted
Location:
United States
Last seen:
3 years, 11 months ago
Joined:
10 years, 4 months ago
Email:
g*****@cshl.edu

Posts by Assaf Gordon

<prev • 32 results • page 1 of 4 • next >
0
votes
0
answers
673
views
0
answers
Fwd: Uploading Error
... Hello Rubina, I'm not familiar with Windows 7, so I'm forwarding your email to the galaxy public mailing list, where the Galaxy team can further help you with your fastq conversion. -gordon Begin forwarded message: Date: July 4, 2011 19:43:31 EDT To: > Subject: RE: uploading error Hi Gordon ...
galaxy written 7.3 years ago by Assaf Gordon320
0
votes
0
answers
676
views
0
answers
Fwd: Uploading Error
... Hello Rubina, I've forwarding your email to the galaxy public mailing list, where the Galaxy team can further help you with your upload. Generally speaking, uploading big FASTQ using the web interface is prone to errors. The Galaxy team added a new upload method, using FTP, which is more reliable. ...
galaxy written 7.3 years ago by Assaf Gordon320
0
votes
1
answer
1.8k
views
1
answers
Comment: C: Fastx Barcode-Splitter
... Hello Jan, Marek Szubert wrote, On 12/16/2010 09:24 AM: If you mean the graphical workflow editor, then the simple answer is "you can't" (to the best of my knowledge). This tool produces a variable number of output files, using the "output.files_path" feature of galaxy. Those output files will no ...
written 7.8 years ago by Assaf Gordon320
0
votes
2
answers
664
views
2
answers
Comment: C: Suggestion On Functionality For Published Workflows
... Hi Jeremy, Thanks for you reply, but let me rephrase my question: Jeremy Goecks wrote, On 01/12/2010 01:29 PM: The existing functionality of the 'import via link' is great, and I use it a lot. My question is about the new "list public histories page": http://main.g2.bx.psu.edu/history/list_publi ...
written 8.8 years ago by Assaf Gordon320
0
votes
2
answers
1.9k
views
2
answers
Comment: C: Setting Environment For Sge Scripts
... SGE supports per-user defaults file called "~/.sge_request" , which can be used to set job's environment variables (and other qsub parameters). I think it was mentioned in the galaxy-dev list (I don't remember by whom). Example: ============ $ cat ~/.sge_request -v PERL5LIB=/data/hannon/gordon/pe ...
written 9.0 years ago by Assaf Gordon320
0
votes
0
answers
595
views
0
answers
Sharing Histories Use Case (Another Rant)
... Another small usability issue... Use case: I want to share an existing history by link. 1. click on "options" button 2. click on "Stored By you" link (not very intuitive - one needs to read the grayed line ABOVE the link for the complete sentence: "List Your Histories Stored By You" ... usually it ...
galaxy written 9.0 years ago by Assaf Gordon320
0
votes
0
answers
665
views
0
answers
"Pages" In History List (Short Rant)
... (My galaxy's not working, I have lots of time to write emails...) There's a new "pages" feature on the main galaxy site (was it introduced just yesterday?). It almost gave me a heart attack... There's no clear indication of division to pages (like a big shiny "next" button) and the links to the 1/ ...
galaxy written 9.0 years ago by Assaf Gordon320
0
votes
2
answers
940
views
2
answers
Answer: A: Re: Passing A String With Spaces To A Tool
... Add single quotes to the XML variable $str : mycommand.pl -str '$str' Then, spaces from the web interface will be preserved (single quoted, double quoted and other 'potentially unsafe' characters will still be converted into __sq__). ...
written 9.2 years ago by Assaf Gordon320
0
votes
0
answers
558
views
0
answers
New Galaxy Tools
... Hello, I'd like to share some new tools for Galaxy, which you can install on your local Galaxy server: FASTX-Toolkit - tools for FASTA/FASTQ pre-processing: http://hannonlab.cshl.edu/fastx_toolkit/ Unix-Tools - wrappers for common unix command line programs: http://hannonlab.cshl.edu/galaxy_unix_ ...
galaxy written 9.6 years ago by Assaf Gordon320
0
votes
1
answer
911
views
1
answer
Automating Tool Update
... Hello, I have a tool which reads options from a text file (with a 'from_file' directive in the XML). A cron job regularly updates the file, and I need to reload the tool. Until recently I've used the following hack to force a tool reload (inside a shell script): wget -q -O /dev/null http://localh ...
galaxy written 9.6 years ago by Assaf Gordon320 • updated 9.6 years ago by Nate Coraor3.2k

Latest awards to Assaf Gordon

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 97 users visited in the last hour