User: paulinefontaine87

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United States
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Joined:
2 years, 5 months ago
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p****************@gmail.com

Posts by paulinefontaine87

<prev • 3 results • page 1 of 1 • next >
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Answer: A: RNAseq data mapping to reference genome
... Hello Guy, Now that I have all my Freebayes VCF files, I can see some "alterations" to the reference genome in them. However do you how I can find out whether this alteration is: - located in an exon or intron? - the number of reads that have this alteration? - changing the codon? Or more gener ...
written 2.3 years ago by paulinefontaine8710
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Answer: A: RNAseq data mapping to reference genome
... Thank you Guy, that really help. Now the only thing is I can't seem to select my region of interest on chromosome III (Region Chromosome, Start and end). Is it case sensitive maybe? Thanks, PF     ...
written 2.4 years ago by paulinefontaine8710
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RNAseq data mapping to reference genome
... Hello, I have some RNAseq Illumina fastq data. I would like to align it to the referece genome of c. elegans ce10. I have been struggling trying to do it in Galaxy. Can you tell me what steps to do in order to get my VCF files and do so? Thank you, PF ...
bowtie tophat rna-seq written 2.4 years ago by paulinefontaine8710 • updated 2.2 years ago by Guy Reeves1.0k

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