User: jcolella.jc

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Posts by jcolella.jc

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liblapack needs to be installed (ADMIXTURE)
... Tried running ADMIXTURE through Galaxy and receive ImportError: liblapack.so.3: cannot open shared object file: No such file or directory. I believe this means that the system library called liblapack not installed on the machine(s) running the jobs. Usually the command sudo apt-get install libla ...
admixture liblapack packageinstall error written 2.3 years ago by jcolella.jc0
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Comment: C: Converting Files To Gd_Snp Format
... Hi Cathy, I see this post is somewhat old but I was wondering if the "pgSNP to gd_SNP" tool was every uploaded to galaxy?? I still do not see it anywhere (Convert Formats, Genome Diversity, Phenotypic Association...). Is there any chance I could have access to the script mentioned in this thread? ...
written 2.8 years ago by jcolella.jc0
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Comment: C: Custom Build reference WIDTH error
... I ran the Fasta Manipulation tool on the custom built reference, but I still receive the same error when trying to convert my VCF file to a gd_SNP file. I have tried the width-corrected-Custom-Reference and an 'unspecified(?)' reference - all give the same error. As an alternative I have transforme ...
written 2.8 years ago by jcolella.jc0
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Custom Build reference WIDTH error
... Hello, I am trying convert my data into gd format for use in the Convert tool under the Genomic Diversity tab. I have a filtered vcf file of all my SNPs already uploaded to Galaxy and was advised to "Custom Build" a reference genome using the reference I used for my original assembly. I have import ...
reference custom build width error written 2.9 years ago by jcolella.jc0 • updated 2.7 years ago by tiagoantao30

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