User: simranmaggo

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New Zealand
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Posts by simranmaggo

<prev • 6 results • page 1 of 1 • next >
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Seattleseq annotation output question
... I am a pharmacology graduate with no bioinformatic training, but have been making my way slowly analysing exomes using galaxy. I have generated a vcf file which I have input into seattle seq for annotation. I am a bit confused with some of the output in the chromosome column (I understand what 1-22 ...
seattleseq vcf exomeseq annotation written 3.0 years ago by simranmaggo0
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Comment: A: fastq.gz files receiving error (Problem decompressing)
... The issue is now resolved. I was forwarded a new .gz file which I uploaded and it seemed to work fine. Thank you. ...
written 3.0 years ago by simranmaggo0
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Comment: A: fastq.gz files receiving error (Problem decompressing)
... I have tried both FTP and direct file uploading. As I mentioned above I have a sneaky feeling perhaps there is something wrong with the compression of the file, and have contacted the company who did the exomes to double check. Thanks, ...
written 3.0 years ago by simranmaggo0
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Comment: A: fastq.gz files receiving error (Problem decompressing)
... 1.7 GB I have contacted the company who did the exomes for us to check the file. I have managed to upload the rest to galaxy successfully, one file keeps giving an error (as described in my original post). ...
written 3.0 years ago by simranmaggo0
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Comment: A: fastq.gz files receiving error (Problem decompressing)
... Yes there is only one file, I have checked by locally decompressing the file. I think there seems to be some issue while uploading, I have tried a few times with some other files and it works after a few goes. Suspecting perhaps the files are getting corrupted during upload. ...
written 3.0 years ago by simranmaggo0
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fastq.gz files receiving error (Problem decompressing)
... I uploaded 8 fastq.gz files. Two decompressed fine upon upload the remaining six say: Problem decompressing gzipped data Can someone please advise on how to fix this? Decompressing of the files works fine on my computer. Thanks. ...
fastq.gz software error written 3.0 years ago by simranmaggo0

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