User: rioualen

gravatar for rioualen
rioualen10
Reputation:
10
Status:
New User
Location:
France
Last seen:
1 year, 2 months ago
Joined:
2 years, 10 months ago
Email:
r*************@gmail.com

Posts by rioualen

<prev • 8 results • page 1 of 1 • next >
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Comment: C: How to import a published workflow from a Galaxy server to my server?
... Thank you, I'd missed that one apparently! Is there a way to find demo datasets to test workflows from the Galaxy team? Like this one for example: https://usegalaxy.org/u/galaxyproject/w/variant101 Thanks again ...
written 17 months ago by rioualen10
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How to import a published workflow from a Galaxy server to my server?
... Hello, I would like to try to use published workflow. I found a list [here][1]. I can either "import" them or "save as file". I don't want to chose import cause I want to use them in my own server. If I save as a file it gives me a .json like file, with a .ga extension. How can I use that file the ...
workflow written 17 months ago by rioualen10 • updated 17 months ago by Jennifer Hillman Jackson25k
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Comment: C: "An error occurred while getting updates from the server."
... Yeah I noticed, but I don't get why... It includes this traceback: { "userAgent": "Mozilla/5.0 (X11; Linux x86_64; rv:50.0) Gecko/20100101 Firefox/50.0", "onLine": true, "version": "16.10", "xhr": { "readyState": 4, "responseText": "{\"err_msg\": \"Histo ...
written 17 months ago by rioualen10
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"An error occurred while getting updates from the server."
... Hi, We installed our own galaxy server locally, but are still struggling with a few things. Anyway, since yesterday we've been getting a vague error message upon logging in with our accounts : "An error occurred while getting updates from the server. Please contact a Galaxy administrator if the ...
server written 17 months ago by rioualen10
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Answer: C: Multiple dataset option does not work?
... Okay it was just a stupid mistake from me, I did not manually select the files in the box, I thought they were all selected by default... So sorry for the trouble! Thanks for the help. ...
written 17 months ago by rioualen10
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Multiple dataset option does not work?
... Hi, I can't seem to perform operations on multiple datasets instead of single datasets. See screencap attached. ![screencap][2] Same problem appeared with "FastQC" and "Extract BAM/SAM from SRA" tools. It works just fine on these datasets separately. I'm relatively new to Galaxy so I might be ...
dataset multiple written 17 months ago by rioualen10 • updated 17 months ago by Jennifer Hillman Jackson25k
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Answer: A: fastq-dump on Galaxy?
... Thanks! I was indeed thinking of this explanation. So I went for the local installation, and added fastq-dump tool from the Tool Shed following this tutorial: https://wiki.galaxyproject.org/Admin/Tools/AddToolFromToolShedTutorial However I get the following error when converting my files: /home/ ...
written 2.8 years ago by rioualen10
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fastq-dump on Galaxy?
... Hello, I'm just getting my hands on Galaxy. I imported local .sra files as my starting data, but I can't find the fastq-dump conversion tool under the left menu "Convert formats". Is there something I am not doing right? This should be a very simple operation I guess... Thanks ...
sra fastq-dump fastq written 2.9 years ago by rioualen10

Latest awards to rioualen

Scholar 17 months ago, created an answer that has been accepted. For C: Multiple dataset option does not work?

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