User: linda.boshans

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Posts by linda.boshans

<prev • 7 results • page 1 of 1 • next >
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error running DESeq2
... Hello, I am running DeSeq2 on tophat Htseq converted files. The job is marked red with an error, but I did get an analysis of differentially expressed genes. I am wondering if this error can be ignored and whether I can trust the outputted results. The error is coming from "Error in text(x = c(0, ...
deseq2 known-issue tool error written 13 months ago by linda.boshans0 • updated 13 months ago by Jennifer Hillman Jackson23k
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error using HTseq-count for conversion of .bam to raw counts
... Hello, I am trying to convert the .bam files I got as output from tophat alignment into raw counts so that I can do differential expression analysis with DESeq2. I am using a genes.gtf files that I obtained from iGenome. I have picked the option of sorting the files by name for paired end reads. ...
htseq raw counts error written 13 months ago by linda.boshans0 • updated 13 months ago by Jennifer Hillman Jackson23k
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cufflink jobs in queue for 3 days
... Hello, I had set up a cufflink job saturday morning. I thought it may have been an error on my ends since my previous cufflink jobs had ran immediately, I quit and reran the jobs saturday night. Since then, it has been grey with "job is waiting to run". Is this normal? Is there any way to speed thi ...
job queue cufflinks rna-seq written 13 months ago by linda.boshans0 • updated 13 months ago by Jennifer Hillman Jackson23k
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Answer: A: purged entire history, still says I'm using 70% of space
... Nevermind, it's slowly deleting, just taking a while. Thank you so much for your help!!! ...
written 13 months ago by linda.boshans0
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Answer: A: purged entire history, still says I'm using 70% of space
... Okay, so I do see a history with 97 GB. I've tried purging it / deleting it permanently but I keep getting an error that it cannot be purged, or it times out. Is there any way to get a galaxy administrator to permanently delete it for me? ...
written 13 months ago by linda.boshans0
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Answer: A: purged entire history, still says I'm using 70% of space
... Thank you for the speedy response! I just checked and now it has lowered down to 58%. Does that sound correct? It its still bit high. I have a total of 40.5 GB in datasets, which is not 58% of 250 GB. ...
written 13 months ago by linda.boshans0
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purged entire history, still says I'm using 70% of space
... Hello, I recently deleted my entire history to make room for a new analysis, and I purged the deleted history as well, but the bar in the top right corner says I'm using 70% of my space. I checked my saved histories and saved datasets and I cannot find anything else that could be using all this spa ...

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