User: tiagoantao

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tiagoantao30
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Location:
United States
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1 week ago
Joined:
2 years ago
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Posts by tiagoantao

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Comment: C: A server for conservation genomics
... The setup that we currently have is based on a single very good machine, and if possible I would like to maintain that. But I am wondering if that could be a serious bottleneck? Say a machine with 6T memory and 128 cores. Managing a single machine is way simpler than a cluster. Disk space is a prob ...
written 7 days ago by tiagoantao30
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Comment: C: A server for conservation genomics
... We already have an internal server with much less users than we would have for this but with a much broader scope. In this case I suspect it would be bwa+gatk/freebayes+stacks. Other tools (more on the downstream for analysis) would also be there but they are probably less intensive. So I would sa ...
written 8 days ago by tiagoantao30
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A server for conservation genomics
... We are currently trying to design a server/cluster for a public conservation genomics galaxy server. Our initial expectation (guestimate) is around 200-300 users mostly using RAD-Seq data (which tends to have way smaller data sizes than WGS). This mostly involves bwa freebayes and stacks, but to le ...
rad-seq galaxy hardware admin public written 9 days ago by tiagoantao30 • updated 7 days ago by Bjoern Gruening4.7k
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Answer: A: Custom Build reference WIDTH error
... The current genome diversity code seems to depend on the development version (on github) of galaxy. I had exactly the same problem on both usegalaxy and my own local server and solved it by running from the dev branch on my local server. So, in practice, this code is broken on the main public serve ...
written 23 months ago by tiagoantao30
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Workflow variable rename not working
... Hi, I use constantly dataset renaming in my workflows but I have a case where there might be a bug. In the Abyss plugin I am renaming my scaffold output as: #{reads1}.scaffolds But it comes out renamed as .scaffolds (i.e, nothing is replaced) I am suspecting that this might eventually be a ...
abyss workflow written 23 months ago by tiagoantao30 • updated 18 months ago by Brad Langhorst80

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