User: vebaev

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vebaev130
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Posts by vebaev

<prev • 128 results • page 2 of 13 • next >
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How to uninstall package which not appear in installed tools menu?
... I had previously installed and uninstalled suite_qiime tools package. Now I do not see any tool or package related to Qiime, nevertheless when I want to install other version it says : Qiime 1.9.1 installed via conda. How to remove this or manually uninstall/delete since it was install ...
install qiime written 10 months ago by vebaev130 • updated 10 months ago by Martin Čech ♦♦ 4.8k
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Tool working on Galaxy v17 but give error on Galaxy v16
... Hi, I have installed some tools from the package Qiime on two local Galaxy instances with a successfully green installed label. Nevertheless on a Galaxy v17 it is working and the same tool on a Galaxy v16 give error: Fatal error: Exit code 1 () Traceback (most recent call last): File ...
galaxy qiime 17 16 written 10 months ago by vebaev130 • updated 10 months ago by Jennifer Hillman Jackson25k
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Comment: C: Uncollapse sequences in Galaxy
... Thanks, I got an AWK line that can do it maybe I can make a tool. PS Strange but these data were from BGI 5-6 years ago and they give us only collapsed fasta and fastq :( ...
written 10 months ago by vebaev130
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Comment: C: Uncollapse sequences in Galaxy
... Sorry for writing in the old post but I was searching the same thing. I have fasta files collapsed from FASTx and I want to uncollapse such format: \>name_x99999 or \>name_9999 The copy number is after the _x or _ ...
written 10 months ago by vebaev130
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QIIME availability on Galaxy Main?
... Will QIIME be available on the Galaxy main? I see there is a recent Qiime suite on the main toolshed? ...
qiime written 10 months ago by vebaev130
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Comment: C: is mothur tool working ?
... I will try. How exactly to reset conda dependances as I'm not so into the Galaxy inside kitchen :) ...
written 10 months ago by vebaev130
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Comment: C: is mothur tool working ?
... I got the same error on my local Galaxy? All Mothur tools was installed ok and green. How can I fix the issue? ...
written 10 months ago by vebaev130
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RNA-seq pipeline standard?
... I'm not following the new trends specifically for rna-seq so are there something more innovative or the old TUXEDO Tophat-cufflinks-cuffdiff etc are still good reliable and considered as standard? ( which can be easy inplemented in Galaxy) ...
rna-seq written 19 months ago by vebaev130 • updated 19 months ago by mrals0
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Most recent tools in Main toolshed?
... Is there a way to monitor if there is new tools in specific category in the toolshed submitted? Or at least to sort the tools by date? ...
toolshed written 19 months ago by vebaev130 • updated 19 months ago by Jennifer Hillman Jackson25k
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Comment: C: Persisting cron.hourly jobs with my Galaxy-docker-stable instance
... No, I’m running the original bgruening/docker-galaxy-stable from this December (on a clean ubuntu and just installing tools from the toolshed). Moreover, I have no expertise to modify it :) The question is how can I fix it, or stop these crons if they are not doing anything important rather than tak ...
written 19 months ago by vebaev130

Latest awards to vebaev

Popular Question 8 months ago, created a question with more than 1,000 views. For Unable to fetch .......[Errno 28] No space left on device (Galaxy in Docker)
Popular Question 18 months ago, created a question with more than 1,000 views. For Unable to fetch .......[Errno 28] No space left on device (Galaxy in Docker)
Popular Question 18 months ago, created a question with more than 1,000 views. For Galaxy via Docker?
Popular Question 18 months ago, created a question with more than 1,000 views. For Mapping quality plot of BAM file
Centurion 19 months ago, created 100 posts.
Supporter 19 months ago, voted at least 25 times.
Popular Question 20 months ago, created a question with more than 1,000 views. For Human annotation GFF suitable for Galaxy Cufflinks (hg38)?
Rising Star 3.1 years ago, created 50 posts within first three months of joining.

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