User: vebaev

gravatar for vebaev
vebaev130
Reputation:
130
Status:
Trusted
Location:
Bulgaria
Last seen:
1 week, 6 days ago
Joined:
2 years, 5 months ago
Email:
v*****@plantgene.eu

Posts by vebaev

<prev • 123 results • page 2 of 13 • next >
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Comment: C: is mothur tool working ?
... I will try. How exactly to reset conda dependances as I'm not so into the Galaxy inside kitchen :) ...
written 10 weeks ago by vebaev130
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Comment: C: is mothur tool working ?
... I got the same error on my local Galaxy? All Mothur tools was installed ok and green. How can I fix the issue? ...
written 11 weeks ago by vebaev130
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RNA-seq pipeline standard?
... I'm not following the new trends specifically for rna-seq so are there something more innovative or the old TUXEDO Tophat-cufflinks-cuffdiff etc are still good reliable and considered as standard? ( which can be easy inplemented in Galaxy) ...
rna-seq written 10 months ago by vebaev130 • updated 10 months ago by mrals0
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Most recent tools in Main toolshed?
... Is there a way to monitor if there is new tools in specific category in the toolshed submitted? Or at least to sort the tools by date? ...
toolshed written 10 months ago by vebaev130 • updated 10 months ago by Jennifer Hillman Jackson23k
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Comment: C: Persisting cron.hourly jobs with my Galaxy-docker-stable instance
... No, I’m running the original bgruening/docker-galaxy-stable from this December (on a clean ubuntu and just installing tools from the toolshed). Moreover, I have no expertise to modify it :) The question is how can I fix it, or stop these crons if they are not doing anything important rather than tak ...
written 10 months ago by vebaev130
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Comment: C: Persisting cron.hourly jobs with my Galaxy-docker-stable instance
... The strange thing is that I do not have any hourly cron jobs, it is clean ubuntu and I did not enter any cron jobs?! ...
written 10 months ago by vebaev130
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Persisting cron.hourly jobs with my Galaxy-docker-stable instance
... After some time I have quite many persisting cron.houly jobs taking substantial cpu usage, I do not remember them appearing before.... (I have clean ubuntu 14 with Galaxy-docker-stable 16.10), is that normal? PS, resrarting the container cleans them, but after time they start appearing... ![enter ...
local galaxy cron written 10 months ago by vebaev130 • updated 10 months ago by Bjoern Gruening4.8k
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Comment: C: JBrowse error - No module named 'Bio'
... I have reinstalled BioPython 1.66, again was installed with green status, but got the same error? ...
written 10 months ago by vebaev130
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Comment: C: Bowtie indexing error (local Galaxy)
... Very strange I tried to index the arabidopsis genome and it gives the same error?! ...
written 10 months ago by vebaev130
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Bowtie indexing error (local Galaxy)
... I'm trying to index human genome 38 (fasta downloaded from GENCODE) but after hours working bowtie indexing gives error: Traceback (most recent call last): File "/galaxy-central/lib/galaxy/jobs/runners/__init__.py", line 611, in finish_job job_state.job_wrapper.finish( stdout, std ...
index bowtie written 10 months ago by vebaev130

Latest awards to vebaev

Popular Question 9 months ago, created a question with more than 1,000 views. For Unable to fetch .......[Errno 28] No space left on device (Galaxy in Docker)
Popular Question 9 months ago, created a question with more than 1,000 views. For Mapping quality plot of BAM file
Popular Question 9 months ago, created a question with more than 1,000 views. For Galaxy via Docker?
Centurion 11 months ago, created 100 posts.
Supporter 11 months ago, voted at least 25 times.
Popular Question 11 months ago, created a question with more than 1,000 views. For Human annotation GFF suitable for Galaxy Cufflinks (hg38)?
Rising Star 2.4 years ago, created 50 posts within first three months of joining.

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