User: vebaev

gravatar for vebaev
vebaev120
Reputation:
120
Status:
Trusted
Location:
Bulgaria
Last seen:
3 months ago
Joined:
1 year, 11 months ago
Email:
v*****@plantgene.eu

Posts by vebaev

<prev • 111 results • page 1 of 12 • next >
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RNA-seq pipeline standard?
... I'm not following the new trends specifically for rna-seq so are there something more innovative or the old TUXEDO Tophat-cufflinks-cuffdiff etc are still good reliable and considered as standard? ( which can be easy inplemented in Galaxy) ...
rna-seq written 3 months ago by vebaev120 • updated 3 months ago by mrals0
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Most recent tools in Main toolshed?
... Is there a way to monitor if there is new tools in specific category in the toolshed submitted? Or at least to sort the tools by date? ...
toolshed written 3 months ago by vebaev120 • updated 3 months ago by Jennifer Hillman Jackson22k
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Comment: C: Persisting cron.hourly jobs with my Galaxy-docker-stable instance
... No, I’m running the original bgruening/docker-galaxy-stable from this December (on a clean ubuntu and just installing tools from the toolshed). Moreover, I have no expertise to modify it :) The question is how can I fix it, or stop these crons if they are not doing anything important rather than tak ...
written 3 months ago by vebaev120
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Comment: C: Persisting cron.hourly jobs with my Galaxy-docker-stable instance
... The strange thing is that I do not have any hourly cron jobs, it is clean ubuntu and I did not enter any cron jobs?! ...
written 3 months ago by vebaev120
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Persisting cron.hourly jobs with my Galaxy-docker-stable instance
... After some time I have quite many persisting cron.houly jobs taking substantial cpu usage, I do not remember them appearing before.... (I have clean ubuntu 14 with Galaxy-docker-stable 16.10), is that normal? PS, resrarting the container cleans them, but after time they start appearing... ![enter ...
local galaxy cron written 3 months ago by vebaev120 • updated 3 months ago by Bjoern Gruening4.6k
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Comment: C: JBrowse error - No module named 'Bio'
... I have reinstalled BioPython 1.66, again was installed with green status, but got the same error? ...
written 4 months ago by vebaev120
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Comment: C: Bowtie indexing error (local Galaxy)
... Very strange I tried to index the arabidopsis genome and it gives the same error?! ...
written 4 months ago by vebaev120
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Bowtie indexing error (local Galaxy)
... I'm trying to index human genome 38 (fasta downloaded from GENCODE) but after hours working bowtie indexing gives error: Traceback (most recent call last): File "/galaxy-central/lib/galaxy/jobs/runners/__init__.py", line 611, in finish_job job_state.job_wrapper.finish( stdout, std ...
index bowtie written 4 months ago by vebaev120
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Comment: C: JBrowse error - No module named 'Bio'
... Hi Eric, I will reinstall it, but just checked, the Jbrowse is "green"-marked "installed" which should mean all dependencies should be ok? also: biopython 1.66 Conda , inside Jbrowse have a green check? ...
written 4 months ago by vebaev120
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JBrowse error - No module named 'Bio'
... I installed jbrowse tool with no problem, but on run it gives: Fatal error: Exit code 1 () Traceback (most recent call last): File "/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/69c5e9c0add0/jbrowse/jbrowse.py", line 16, in from Bio.Data import CodonTable ModuleNot ...
jbrowse written 4 months ago by vebaev120 • updated 4 months ago by Eric Rasche20

Latest awards to vebaev

Centurion 4 months ago, created 100 posts.
Supporter 4 months ago, voted at least 25 times.
Popular Question 4 months ago, created a question with more than 1,000 views. For Human annotation GFF suitable for Galaxy Cufflinks (hg38)?
Rising Star 22 months ago, created 50 posts within first three months of joining.

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