User: vebaev

gravatar for vebaev
vebaev120
Reputation:
120
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Trusted
Location:
Bulgaria
Last seen:
1 month ago
Joined:
1 year, 9 months ago
Email:
v*****@plantgene.eu

Posts by vebaev

<prev • 111 results • page 1 of 12 • next >
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RNA-seq pipeline standard?
... I'm not following the new trends specifically for rna-seq so are there something more innovative or the old TUXEDO Tophat-cufflinks-cuffdiff etc are still good reliable and considered as standard? ( which can be easy inplemented in Galaxy) ...
rna-seq written 7 weeks ago by vebaev120 • updated 7 weeks ago by mrals0
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Most recent tools in Main toolshed?
... Is there a way to monitor if there is new tools in specific category in the toolshed submitted? Or at least to sort the tools by date? ...
toolshed written 8 weeks ago by vebaev120 • updated 7 weeks ago by Jennifer Hillman Jackson22k
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Comment: C: Persisting cron.hourly jobs with my Galaxy-docker-stable instance
... No, I’m running the original bgruening/docker-galaxy-stable from this December (on a clean ubuntu and just installing tools from the toolshed). Moreover, I have no expertise to modify it :) The question is how can I fix it, or stop these crons if they are not doing anything important rather than tak ...
written 8 weeks ago by vebaev120
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Comment: C: Persisting cron.hourly jobs with my Galaxy-docker-stable instance
... The strange thing is that I do not have any hourly cron jobs, it is clean ubuntu and I did not enter any cron jobs?! ...
written 8 weeks ago by vebaev120
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Persisting cron.hourly jobs with my Galaxy-docker-stable instance
... After some time I have quite many persisting cron.houly jobs taking substantial cpu usage, I do not remember them appearing before.... (I have clean ubuntu 14 with Galaxy-docker-stable 16.10), is that normal? PS, resrarting the container cleans them, but after time they start appearing... ![enter ...
local galaxy cron written 8 weeks ago by vebaev120 • updated 8 weeks ago by Bjoern Gruening4.5k
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Comment: C: JBrowse error - No module named 'Bio'
... I have reinstalled BioPython 1.66, again was installed with green status, but got the same error? ...
written 9 weeks ago by vebaev120
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Comment: C: Bowtie indexing error (local Galaxy)
... Very strange I tried to index the arabidopsis genome and it gives the same error?! ...
written 9 weeks ago by vebaev120
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Bowtie indexing error (local Galaxy)
... I'm trying to index human genome 38 (fasta downloaded from GENCODE) but after hours working bowtie indexing gives error: Traceback (most recent call last): File "/galaxy-central/lib/galaxy/jobs/runners/__init__.py", line 611, in finish_job job_state.job_wrapper.finish( stdout, std ...
index bowtie written 9 weeks ago by vebaev120
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Comment: C: JBrowse error - No module named 'Bio'
... Hi Eric, I will reinstall it, but just checked, the Jbrowse is "green"-marked "installed" which should mean all dependencies should be ok? also: biopython 1.66 Conda , inside Jbrowse have a green check? ...
written 9 weeks ago by vebaev120
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JBrowse error - No module named 'Bio'
... I installed jbrowse tool with no problem, but on run it gives: Fatal error: Exit code 1 () Traceback (most recent call last): File "/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/69c5e9c0add0/jbrowse/jbrowse.py", line 16, in from Bio.Data import CodonTable ModuleNot ...
jbrowse written 9 weeks ago by vebaev120 • updated 9 weeks ago by Eric Rasche20

Latest awards to vebaev

Centurion 11 weeks ago, created 100 posts.
Supporter 11 weeks ago, voted at least 25 times.
Popular Question 12 weeks ago, created a question with more than 1,000 views. For Human annotation GFF suitable for Galaxy Cufflinks (hg38)?
Rising Star 20 months ago, created 50 posts within first three months of joining.

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