User: vebaev

gravatar for vebaev
vebaev130
Reputation:
130
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Trusted
Location:
Bulgaria
Last seen:
2 days, 18 hours ago
Joined:
2 years, 4 months ago
Email:
v*****@plantgene.eu

Posts by vebaev

<prev • 122 results • page 1 of 13 • next >
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Comment: C: Docker Galaxy Job conf file and SLURM
... I'm using Docker-Galaxy v17, and I'm using it without any change in the job_conf files right now. So probably any of the tools uses 1 CPU at the moment. I would like to make it so I can use more cores. ...
written 6 days ago by vebaev130
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Comment: C: Docker Galaxy Job conf file and SLURM
... Hi, can you share your job_conf file since I want to setup our docker-galaxy also to use more than 1 cpu? I see you have succeeded. ...
written 15 days ago by vebaev130
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Comment: C: How to upload Mouse reference genome mm10, in Fasta format to My Galaxy History
... In this regard can you directly five FASTA GZIP (.fa.gz) file to Galaxy and then feed the data manager or the genome should be unzipped first (local galaxy)? ...
written 25 days ago by vebaev130
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Comment: C: Tool working on Galaxy v17 but give error on Galaxy v16
... Strange, I have upgraded my Galaxy to the latest v17, and the error persists. How is possible to add the missing distribution from the error manually or somehow fix this? ...
written 4 weeks ago by vebaev130
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How to uninstall package which not appear in installed tools menu?
... I had previously installed and uninstalled suite_qiime tools package. Now I do not see any tool or package related to Qiime, nevertheless when I want to install other version it says : Qiime 1.9.1 installed via conda. How to remove this or manually uninstall/delete since it was install ...
install qiime written 4 weeks ago by vebaev130 • updated 29 days ago by Martin Čech ♦♦ 4.2k
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Tool working on Galaxy v17 but give error on Galaxy v16
... Hi, I have installed some tools from the package Qiime on two local Galaxy instances with a successfully green installed label. Nevertheless on a Galaxy v17 it is working and the same tool on a Galaxy v16 give error: Fatal error: Exit code 1 () Traceback (most recent call last): File ...
galaxy qiime 17 16 written 5 weeks ago by vebaev130 • updated 4 weeks ago by Jennifer Hillman Jackson23k
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Comment: C: Uncollapse sequences in Galaxy
... Thanks, I got an AWK line that can do it maybe I can make a tool. PS Strange but these data were from BGI 5-6 years ago and they give us only collapsed fasta and fastq :( ...
written 6 weeks ago by vebaev130
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Comment: C: Uncollapse sequences in Galaxy
... Sorry for writing in the old post but I was searching the same thing. I have fasta files collapsed from FASTx and I want to uncollapse such format: \>name_x99999 or \>name_9999 The copy number is after the _x or _ ...
written 6 weeks ago by vebaev130
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QIIME availability on Galaxy Main?
... Will QIIME be available on the Galaxy main? I see there is a recent Qiime suite on the main toolshed? ...
qiime written 6 weeks ago by vebaev130
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Comment: C: is mothur tool working ?
... I will try. How exactly to reset conda dependances as I'm not so into the Galaxy inside kitchen :) ...
written 6 weeks ago by vebaev130

Latest awards to vebaev

Popular Question 8 months ago, created a question with more than 1,000 views. For Unable to fetch .......[Errno 28] No space left on device (Galaxy in Docker)
Popular Question 8 months ago, created a question with more than 1,000 views. For Mapping quality plot of BAM file
Popular Question 8 months ago, created a question with more than 1,000 views. For Galaxy via Docker?
Centurion 10 months ago, created 100 posts.
Supporter 10 months ago, voted at least 25 times.
Popular Question 10 months ago, created a question with more than 1,000 views. For Human annotation GFF suitable for Galaxy Cufflinks (hg38)?
Rising Star 2.3 years ago, created 50 posts within first three months of joining.

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