User: vebaev

gravatar for vebaev
vebaev120
Reputation:
120
Status:
Trusted
Location:
Bulgaria
Last seen:
9 hours ago
Joined:
1 year, 7 months ago
Email:
v*****@plantgene.eu

Posts by vebaev

<prev • 107 results • page 1 of 11 • next >
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Persisting cron.hourly jobs with my Galaxy-docker-stable instance
... After some time I have quite many persisting cron.houly jobs taking substantial cpu usage, I do not remember them appearing before.... (I have clean ubuntu 14 with Galaxy-docker-stable 16.10), is that normal? PS, resrarting the container cleans them, but after time they start appearing... ![enter ...
local galaxy cron written 9 hours ago by vebaev120
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Comment: C: JBrowse error - No module named 'Bio'
... I have reinstalled BioPython 1.66, again was installed with green status, but got the same error? ...
written 2 days ago by vebaev120
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Comment: C: Bowtie indexing error (local Galaxy)
... Very strange I tried to index the arabidopsis genome and it gives the same error?! ...
written 3 days ago by vebaev120
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Bowtie indexing error (local Galaxy)
... I'm trying to index human genome 38 (fasta downloaded from GENCODE) but after hours working bowtie indexing gives error: Traceback (most recent call last): File "/galaxy-central/lib/galaxy/jobs/runners/__init__.py", line 611, in finish_job job_state.job_wrapper.finish( stdout, std ...
index bowtie written 3 days ago by vebaev120
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Comment: C: JBrowse error - No module named 'Bio'
... Hi Eric, I will reinstall it, but just checked, the Jbrowse is "green"-marked "installed" which should mean all dependencies should be ok? also: biopython 1.66 Conda , inside Jbrowse have a green check? ...
written 4 days ago by vebaev120
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JBrowse error - No module named 'Bio'
... I installed jbrowse tool with no problem, but on run it gives: Fatal error: Exit code 1 () Traceback (most recent call last): File "/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/69c5e9c0add0/jbrowse/jbrowse.py", line 16, in from Bio.Data import CodonTable ModuleNot ...
jbrowse written 6 days ago by vebaev120 • updated 4 days ago by Eric Rasche20
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How to contact toolshed repository owner?
... I have tool that cannot be installed due to errors in wrong download url dependencies. How Can I contact the owner of the tool/repository so he can update it? (as I do not see in toolshed any way for communication) Vesko ...
owner toolshed repo written 16 days ago by vebaev120 • updated 16 days ago by Jennifer Hillman Jackson21k
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Comment: C: Enable/Disable Scratchbook option
... Oh....wow ....I know Galaxy for 1-2 years but never suspect there is this nice feature till now. I always go back-forward on view datasets and try to remember each one so I can figure out the outcome. This will save me time definitely :) ...
written 18 days ago by vebaev120
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Enable/Disable Scratchbook option
... Hi, I have worked and installing tools for more than a few months with Galaxy, but for the option above "Enable/Disable Scratchbook" I have never understood the meaning purpose of it. Can someone enlight me what is this for? :) ...
scratchbook written 18 days ago by vebaev120 • updated 18 days ago by Jennifer Hillman Jackson21k
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Tool (Krona) produce HTML viewable output, but is marked red in history
... I have tried both sanitize_all_html = False and True (with checking the tool on the whitelist) but, the result is the same. I am using the tool Visualize with Krona (krona_text) The tool I think works and produce chart (see image attached), however after completion the result became red and produse ...
sanitize_all_html html krona written 21 days ago by vebaev120 • updated 19 days ago by Hotz, Hans-Rudolf1.5k

Latest awards to vebaev

Centurion 16 days ago, created 100 posts.
Supporter 18 days ago, voted at least 25 times.
Popular Question 28 days ago, created a question with more than 1,000 views. For Human annotation GFF suitable for Galaxy Cufflinks (hg38)?
Rising Star 18 months ago, created 50 posts within first three months of joining.

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