User: ivar.grytten

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ivar.grytten50
Reputation:
50
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Trusted
Location:
Norway
Last seen:
2 years, 1 month ago
Joined:
2 years, 9 months ago
Email:
i***********@gmail.com

Posts by ivar.grytten

<prev • 9 results • page 1 of 1 • next >
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Galaxy API: Tool build data missing html for input fields
... Hello, I noticed the following when using the api for getting tool info /api/tool/{tool-id}/build If you run this in a browser window where are already signed into Galaxy, you get the full html for input select dataset fields, e.g. opening the following in a browser window: https://usegalaxy.o ...
api tool written 2.6 years ago by ivar.grytten50
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Comment: C: How to uninstall local Galaxy
... You get a Permission denied error. Have you tried running the command as root, using "sudo sh run.sh"? Please reply as a comment, not as a new anwer :) ...
written 2.7 years ago by ivar.grytten50
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Comment: C: How to uninstall local Galaxy
... Regarding uninstalling: Have you tried just deleting the whole folder where galaxy is installed?  As far as I know, the installation on Linux only uses one folder. If you want to change which hard drive galaxy is intalled on, you could  try to just move that folder to the new hard drive on the same ...
written 2.7 years ago by ivar.grytten50
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Comment: C: API: get /tools/{tool-id}/build gives Uncaught exception error (but depends on g
... Great, thanks! ...
written 2.8 years ago by ivar.grytten50
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Comment: C: API: get /tools/{tool-id}/build gives Uncaught exception error (but depends on g
... This is strange, but right after updating my post, I tried to send the same requests again without specifying any API-key, and that actually works! So this is the scenario: If I specify my API-key, usegalaxy.org returns {"err_msg": "Uncaught exception in exposed API method:", "err_code": 0} If ...
written 2.8 years ago by ivar.grytten50
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Comment: C: API: get /tools/{tool-id}/build gives Uncaught exception error (but depends on g
... Thanks for your reply! I have updated my original post with reply (upload1 actually works, but not other tools. See update in my original post for details). ...
written 2.8 years ago by ivar.grytten50
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API: get /tools/{tool-id}/build gives Uncaught exception error (but depends on galaxy server)
... Hello! I am sending a GET request to /api/tools/{tool-id}/build with valid key and history_id parameters (following the documentation at https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/webapps/galaxy/api/tools.py#L88). This works fine when sending the request to my local galaxy server ...
galaxy api written 2.8 years ago by ivar.grytten50
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Comment: C: Galaxy API: Re-running job causes error
... I see! Thank you! ...
written 2.8 years ago by ivar.grytten50
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Galaxy API: Re-running job causes error
... Hello, I am using the galaxy API to rerun a tool doing a POST to /api/tools with action set to "rerun", target_dataset_id set to an api_id of a previous job and inputs set to empty (so that previous inputs will be used). My debugging shows that the galaxy server correctly starts to rerun the tool. ...
galaxy api written 2.8 years ago by ivar.grytten50 • updated 2.8 years ago by Dannon Baker3.7k

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