User: biowz

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biowz0
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2 years, 11 months ago
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3 years, 4 months ago
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b****@mail.ustc.edu.cn

Posts by biowz

<prev • 29 results • page 1 of 3 • next >
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Comment: C: how to clean the current library
... Thank you very much! I pasted this file under galaxy root dir, but I met another question,as follow: Traceback (most recent call last):   File "./cleanup_datasets.py", line 531, in <module>     if __name__ == "__main__": main()   File "./cleanup_datasets.py", line 101, in main     for key ...
written 3.2 years ago by biowz0
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Comment: C: how to clean the current library
... If I just run this code, the errors like this as following: Traceback (most recent call last):   File "/Users/biowzmailustceducn/galaxy/scripts/cleanup_datasets/cleanup_datasets.py", line 14, in <module>     from galaxy import eggs ImportError: No module named galaxy Would you like to hel ...
written 3.2 years ago by biowz0
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Comment: C: how to clean the current library
...  Hi Bjoern, First  I added the following sentences in  cleanup_datasets.py from" ./ scripts/cleanup_datasets/cleanup_datasets.py" GALAXY_LIB="/Users/biowzmailustceducn/galaxy/lib" if [ "$GALAXY_LIB" != "/Users/biowzmailustceducn/galaxy/lib" ]: then     if [ -n "$PYTHONPATH" ]: then         expo ...
written 3.2 years ago by biowz0
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Comment: C: failed to upload .bam file
... Hi Jen, I am not sure whether it is new or old one.How I can check the version of galaxy? I did not install samtools or picard independently, only as appliance tool for Tophat2. How I update my local galaxy? Thank you very much for your great help. Best wishes   Hill         ...
written 3.2 years ago by biowz0
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failed to upload .bam file
... I used samtools merge to merge new bam file. After that, I upload this file, but galaxy can not recognize it. The errors as follow: Traceback (most recent call last): File "/Users/biowzmailustceducn/galaxy/tools/data_source/upload.py", line 430, in <module> __main__() File "/Users/bio ...
bam file written 3.2 years ago by biowz0 • updated 3.2 years ago by Jennifer Hillman Jackson25k
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how to clean the current library
... I used local galaxy to run data. However I deleted the current library. but I think this still occupied my disk volume. I  want to clean them totally, how  I can do it? Thank you very much in advance!  ...
local galaxy current library written 3.2 years ago by biowz0 • updated 3.2 years ago by Bjoern Gruening5.1k
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How to solve galaxydb error in local galaxy?
... I want to add FTP on my local galaxy.I thought I established galaxyftp and galaxydb on my mac, but when I entered into galaxydb and changed the password. There is still one mistake as follow. Whether it was given a password or not, the same. Would you like to help me solve this problem? $:~ postgre ...
postgress local galaxy ftp written 3.3 years ago by biowz0 • updated 3.1 years ago by Jennifer Hillman Jackson25k
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Comment: C: How to establish galaxydb on local galaxy for >2GB data
... Thank you for your reply. I thought I established galaxyftp and galaxydb on my mac, but when I entered into galaxydb and changed the password. There is still one mistake as follow. Whether it was given a password or not, the same. Would you like to help me solve this problem? $:~ postgres$ psql gal ...
written 3.3 years ago by biowz0
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How to establish galaxydb on local galaxy for >2GB data
... I follow the galaxy tutorial to establish FTP on local galaxy and meet the following errors, ~ postgres$ createuser -sdr galaxyftp Password:  ~ postgres$ psql galaxydb Password:  psql: FATAL:  database "galaxydb" does not exist ~ postgres$ createdb -O Galaxydb Password:  createdb: database c ...
local ftp postgres written 3.3 years ago by biowz0 • updated 3.1 years ago by Jennifer Hillman Jackson25k
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Comment: C: Getting tophat2 ref index when using data_managers
... Thank you very much for  your  reply. Right now  everything is OK, though I do not know the reason. Fortunately , I can go for next steps. Thank you! Have a good day for both you and Jennifer. ...
written 3.3 years ago by biowz0

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