User: mohamed_refaat.1992

Reputation:
10
Status:
New User
Location:
Egypt
Last seen:
1 year, 11 months ago
Joined:
1 year, 11 months ago
Email:
m******************@yahoo.com

Posts by mohamed_refaat.1992

<prev • 4 results • page 1 of 1 • next >
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VCFfilter: combining 2 expressions using OR or AND.
... **Updated question** Hi, I'm trying to filter an vcf file using VCFfilter. I want to know how to combine 2 filters together. To make it clearer, i want to use -f"TYPE=del' and -f"TYPE=ins", but i don't know  how to combine them correctly. Can anyone help me in this issue ? Thanks in advance. Moh ...
vcf vcf-filter tutorial tool options written 23 months ago by mohamed_refaat.199210 • updated 6 weeks ago by Jennifer Hillman Jackson22k
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Problems running Bowtie2!
... Hi everyone, I'm trying to map a paired-end seq. to the human genome using Bowtie2. Unfortunately every time i execute the job, it doesn't run! The job stays gray,not turning to green or even yellow. Used to run the same job a week ago and it ran very well. Can anyone help me why I'm facing this pro ...
bowtie written 23 months ago by mohamed_refaat.199210 • updated 23 months ago by Jennifer Hillman Jackson22k
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(Closed) Classifying the variants
... Hi everyone, Does anybody know what is the suitable tool classify and quantify the variants according to their type? Thanks in advance  ...
vcf written 23 months ago by mohamed_refaat.199210
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How to classify the variants into different groups?
... Hello, This is my first time using galaxy. I ran Free Bayes to detect the variants of a data set against the reference genome, but can't classify the kinds of variants I got according to it's types(snp,mnp,ins,..).  So i'm asking if there is a tool that can help me detect the number of each variant ...
vcf written 23 months ago by mohamed_refaat.199210 • updated 23 months ago by Jennifer Hillman Jackson22k

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