User: thomas.draebing

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New User
Location:
Germany
Last seen:
1 year, 9 months ago
Joined:
2 years, 5 months ago
Email:
t**************@gmail.com

Posts by thomas.draebing

<prev • 14 results • page 1 of 2 • next >
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Answer: A: Galaxy and Nginx Config
... I actually switched to Apache, which works fine. Haven't tried to get nginx running since. Sorry. ...
written 21 months ago by thomas.draebing20
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Comment: C: Unicode error after installing package_python_2_7_10
... In my case Galaxy actually also tried to install package_freetype, although the required version was already installed. But it stuck at showing it as 'New'. Since it was displayed as missing requirement, I uninstalled the package_freetype version already existing and reinstalled it, which solved the ...
written 2.0 years ago by thomas.draebing20
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Comment: C: Unicode error after installing package_python_2_7_10
... package_python_2_7_matplotlib_1_4 actually installed fine for me after applying your solution. I had some undescriptive errors with the numpy and some other dependencies at first. Just some generic error that the dependency installation failed (Sorry, I cannot find the exact error message right now) ...
written 2.0 years ago by thomas.draebing20
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Comment: C: Unicode error after installing package_python_2_7_10
... That worked perfectly! Thank you so much! ...
written 2.0 years ago by thomas.draebing20
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Comment: C: Unicode error after installing package_python_2_7_10
... I rebuild my system python now with --enable-unicode=ucs2. I checked whether the configuration worked with 'sys.maxunicode'. The output was correct. Trying to install numpy in galaxy gave me the same error as before. For your reference I uploaded the installation.log file in the corresponding depend ...
written 2.1 years ago by thomas.draebing20
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Unicode error after installing package_python_2_7_10
... Hi all, I tried to install the newest versions of numpy, matplotlib etc. onto our local galaxy server. These need the python 2.7.10 package, which installs just fine. But the numpy, matplotlib dependencies do not install with the following error: Traceback (most recent call last): File "/usr/lo ...
python installation written 2.1 years ago by thomas.draebing20 • updated 2.0 years ago by Devon Ryan1.8k
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Answer: A: Diffbind ignores R_HOME and searches diffbind.R in wrong path
... Hi Bjoern, I tried to run diffbind again today and it gave the correct path to RScript now, without me making any further changes. The only thing I did after the last test was running MACS2 again to test, whether it can communicate with R. I think it was the update that helped. Although I restarte ...
written 2.3 years ago by thomas.draebing20
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Comment: C: Diffbind ignores R_HOME and searches diffbind.R in wrong path
... Sorry for the confusion. The diffbind.R file is here: /home/galaxy_production/shed_tools/toolshed.g2.bx.psu.edu/repos/bgruening/diffbind/9e9f85c20d99/diffbind/diffbind.R. Galaxy is in /home/galaxy_production/galaxy-dist/. It is strange, that the shed_tools folder is outside the galaxy folder, but s ...
written 2.3 years ago by thomas.draebing20
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Comment: C: Diffbind ignores R_HOME and searches diffbind.R in wrong path
... Actually the diffbind folder is there: /home/galaxy_production/shed_tools/toolshed.g2.bx.psu.edu/repos/bgruening/diffbind/9e9f85c20d99/diffbind/diffbind.R (copied from above) I noticed that the diffbind folder was missing in your post, just thought of it as a typo. Sorry. ...
written 2.3 years ago by thomas.draebing20
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Comment: C: Diffbind ignores R_HOME and searches diffbind.R in wrong path
... Yes, it is there. The galaxy-dist/config/shed_tool_conf.xml also gives that path: <toolbox tool_path="../shed_tools"> ... <tool file="toolshed.g2.bx.psu.edu/repos/bgruening/diffbind/9e9f85c20d99/diffbind/diffbind.xml" guid="toolshed.g2.bx.psu.edu/repos/bgruening/diffbind/diffbind/2.0.2 ...
written 2.3 years ago by thomas.draebing20

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